View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5684_high_3 (Length: 578)
Name: NF5684_high_3
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 19 - 573
Target Start/End: Complemental strand, 1478868 - 1478311
Alignment:
| Q |
19 |
aacaatgaccaaatctcattctccaaactctttgttgtatatttaataatatgcttatcaaccacaccttcatcatttt---caattgacaaaatgtaat |
115 |
Q |
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| T |
1478868 |
aacaatgaccaaatctcattctccaaactctttgttgtatatttaataatatgcttatcaaccacaccttcatcattttgatcaattgacaaaatgtaat |
1478769 |
T |
|
| Q |
116 |
tcttcaaataaaccttatagattggtataataccttccaccaaatgcttgcatatgttttccctcaatatcacatcagagattatccaattacattgctt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1478768 |
tcttcaaataaaccttatagattggtataataccttccaccaaatgcttgcatatgttttccctcaatatcacatcagagattatccaattacattgctt |
1478669 |
T |
|
| Q |
216 |
cttatacatttcatcaaaagctagactaaaagcatttattctcttaaccaaatcttgacaagtcattgaagatgaaactacaagaatattttgaagattt |
315 |
Q |
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| T |
1478668 |
cttatacatttcatcaaaagctagactaaaagcatttattctcttaaccaaatcttgacaagtcattgaagatgaaactacaagaatattttgaagattt |
1478569 |
T |
|
| Q |
316 |
ccccaactattcctcaaataaagggctgcataatattctttatattgttcatgtgctcttaaccaagaatctcccatcatatttccaactaaagtaccct |
415 |
Q |
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| T |
1478568 |
ccccaactattcctcaaataaagggctgcataatattctttatattgttcatgtgctcttaaccaagaatctcccatcatatttccaactaaagtaccct |
1478469 |
T |
|
| Q |
416 |
ttaaattgtagaaatgacaatggttattcatcatnnnnnnntatgacaaatttatatcttcataggcttttgaccaatcatccaaattaactgcaacttc |
515 |
Q |
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| T |
1478468 |
ttaaattgtagaaatgacaatggttattcatcataaaaaaatatgacaaatttatatcttcataggcttttgaccaatcatccaaattaactgcaacttc |
1478369 |
T |
|
| Q |
516 |
cttaattatgctatatatttgaccaacaaaaataccctcttcaaatagttcatctctc |
573 |
Q |
| |
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| T |
1478368 |
cttaattatgctatatatttgaccaacaaaaataccctcttcaaatagttcatttctc |
1478311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 250 - 337
Target Start/End: Complemental strand, 1482698 - 1482605
Alignment:
| Q |
250 |
tttattctcttaaccaaatcttgacaa------gtcattgaagatgaaactacaagaatattttgaagatttccccaactattcctcaaataaa |
337 |
Q |
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|||||||||||| | |||||||||||| ||||| || || |||||||||| |||| |||||||||||||||||||| |||||||||||| |
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| T |
1482698 |
tttattctcttagctaaatcttgacaactcagagtcatagaggaagaaactacaataatagtttgaagatttccccaactactcctcaaataaa |
1482605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 537
Target Start/End: Complemental strand, 18289884 - 18289360
Alignment:
| Q |
19 |
aacaatgaccaaatctcattctccaaactctttgttgtatatttaataatatgcttatcaaccacaccttcatcattttcaattgacaaaatgtaattct |
118 |
Q |
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||||||||||||||| |||| |||||||||||| ||||||||||| | | | |||||||||| | | ||||||||||||| ||||||||||||||||| |
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| T |
18289884 |
aacaatgaccaaatcctattccccaaactctttgctgtatatttaacattcttgttatcaaccatagcatcatcattttcaagtgacaaaatgtaattct |
18289785 |
T |
|
| Q |
119 |
tcaaataaaccttatagattggtataataccttccaccaaatgcttgcatatgttttccctcaatatcacatcagagattatccaattacattgcttctt |
218 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||||||| || ||||||| | |||||||||||||| |||||||||||||||| |
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| T |
18289784 |
tcaaatataccttatagattggtataataccttccaccaaatgtttgcatacccatttcctcaatgcctcatcagagattatcaaattacattgcttctt |
18289685 |
T |
|
| Q |
219 |
atacatttcatcaaaagctagactaaaagcatttattctcttaaccaaatcttgaca------agtcattgaagatgaaactacaagaatattttgaaga |
312 |
Q |
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|| ||||||||||||||||| |||||| ||||||||||||| | | ||||||||| |||||| || ||||||| | |||||||| |||||| | |
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| T |
18289684 |
gcacctttcatcaaaagctagagtaaaagtatttattctcttagctagatcttgacaagtcatagtcatagaggatgaaatttcaagaatagtttgaata |
18289585 |
T |
|
| Q |
313 |
tttccccaactattcctcaaataaagggctgcataatattctttatattgttcatgtgctcttaaccaagaatctcccatcatatttccaactaaagtac |
412 |
Q |
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||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
18289584 |
tttccccaactattcctcagataaagtgctgcataatattctttatattgttcatgtgctcttaaccaagaatctcccatcatattcccaactaaactac |
18289485 |
T |
|
| Q |
413 |
cctttaaattgtagaaatgacaatggttattcatcatnnnnnnntatgacaaatttatatcttcataggcttttgaccaatcatccaaattaactgcaac |
512 |
Q |
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|||||||||| || |||||| |||| ||||||||||| || || ||||| ||||||||||||||||||||||||| |||||| || |||||||| |
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| T |
18289484 |
cctttaaattataaaaatgaaaatgattattcatcataaaaaaataggataaattgatatcttcataggcttttgaccaattatccaagtttactgcaac |
18289385 |
T |
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| Q |
513 |
ttccttaattatgctatatatttga |
537 |
Q |
| |
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|| ||||| ||||||||||||||| |
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| T |
18289384 |
ctctttaatcatgctatatatttga |
18289360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 421 - 505
Target Start/End: Complemental strand, 14002001 - 14001918
Alignment:
| Q |
421 |
ttgtagaaatgacaatggttattcatcatnnnnnnntatgacaaatttatatcttcataggcttttgaccaatcatccaaattaa |
505 |
Q |
| |
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||||||||||||||||| ||||||||||| || |||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
14002001 |
ttgtagaaatgacaatgattattcatcataaaaaa-taggacaaattgatatcttcgtaggcttttgaccaatcatccaaattaa |
14001918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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