View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5684_high_38 (Length: 243)
Name: NF5684_high_38
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_high_38 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 48 - 242
Target Start/End: Original strand, 4110758 - 4110952
Alignment:
| Q |
48 |
cctgttgaaagacattgaatatttccagaaaattaaatgcgtcactaacaggcacaatcacacacaagggtatttattcaatccattgaagattatgtgt |
147 |
Q |
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| T |
4110758 |
cctgttgaaagacattgaatatttccagaaaattaaatgcgtcactaacaggcacaatcacacacaagggtatttattcaatccattgaagattatgtgt |
4110857 |
T |
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| Q |
148 |
attttgtttcactaacagaattgactttaccaaaaagtatagattttgggttcctgtcagacaaaattgccagactctaaatctcatgtctgtgc |
242 |
Q |
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| T |
4110858 |
attttgtttcactaacagaattgactttaccaaaaagtatagattttgggttcctgtcagacaaaattgccagactctaaatctcatgtctgtgc |
4110952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4110414 - 4110464
Alignment:
| Q |
1 |
caaatcaagactcgcaatgttgtcattaccttccggttccatatcttcctg |
51 |
Q |
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| T |
4110414 |
caaatcaagactcgcaatgttgtcattaccttccggttccatatcttcctg |
4110464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 48 - 235
Target Start/End: Complemental strand, 17651011 - 17650825
Alignment:
| Q |
48 |
cctgttgaaagacattgaatatttccagaaaattaaatgcgtcactaacaggcacaatcacacacaagggtatttattcaatccattgaagattatgtgt |
147 |
Q |
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| T |
17651011 |
cctgttgaaagacattcaatatttccagaaaattaaatgcgtcaataacagacacaatcacacacaagggtatttattcaatccattgaagattatgtgt |
17650912 |
T |
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| Q |
148 |
attttgtttcactaacagaattgactttaccaaaaagtatagattttgggttcctgtcagacaaaattgccagactctaaatctcatg |
235 |
Q |
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| T |
17650911 |
attttgtttcgctaatagaattgattttgtcaaaaggtataga-tttgggttcctgtcagacaaaattgtcggactctaaatctcatg |
17650825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 17651397 - 17651347
Alignment:
| Q |
1 |
caaatcaagactcgcaatgttgtcattaccttccggttccatatcttcctg |
51 |
Q |
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| T |
17651397 |
caaatcaagactcgcaatgttgttattgccttccggttccatatcttcctg |
17651347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 17651334 - 17651290
Alignment:
| Q |
7 |
aagactcgcaatgttgtcattaccttccggttccatatcttcctg |
51 |
Q |
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| T |
17651334 |
aagacccgcaatgttgtcattaccttcaggttctatatcttcctg |
17651290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 48 - 235
Target Start/End: Original strand, 14697892 - 14698073
Alignment:
| Q |
48 |
cctgttgaaagacattgaatatttccagaaaattaaatgcgtcactaacaggcacaatcacacacaagggtatttattcaatccattgaagattatgtgt |
147 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14697892 |
cctgttgaaagacattcaatatttccagaaaattaaatgcgtcaataacagacacaatcacacacaagggtatttattcaatccattgaagattatgcgt |
14697991 |
T |
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| Q |
148 |
attttgtttcactaacagaattgactttaccaaaaagtatagattttgggttcctgtcagacaaaattgccagactctaaatctcatg |
235 |
Q |
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| T |
14697992 |
attttgtttcgctaatagaattgattttgttaaaaagtatagatttgg------tgtcagacaaaattgtcggactctaaatctcatg |
14698073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 14697506 - 14697556
Alignment:
| Q |
1 |
caaatcaagactcgcaatgttgtcattaccttccggttccatatcttcctg |
51 |
Q |
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| T |
14697506 |
caaatcaagactcgcaatgttgttattgccttccggttccatatcttcctg |
14697556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 14697576 - 14697613
Alignment:
| Q |
14 |
gcaatgttgtcattaccttccggttccatatcttcctg |
51 |
Q |
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| T |
14697576 |
gcaatgttgtcattaccttcaggttctatatcttcctg |
14697613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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