View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5684_high_39 (Length: 242)
Name: NF5684_high_39
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 24580020 - 24580235
Alignment:
| Q |
19 |
ctaaatcctaataggaagtacaaaatagacgattcattggaacctagggtaagccagtgcatttttctccctaaaccaaccatttctttttgctaatata |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||| |
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| T |
24580020 |
ctaaatcctaataggaagtacaaaatagacgattcattggaatctagggtaagccagtgcgtttttcaccctaaaccaaccatttctctttgctaatata |
24580119 |
T |
|
| Q |
119 |
tgcacacatctcttccaaaa------cacatgcacaccacctccaagaaccaactatatgttacctactagtcttctataaaacctttgttcattaagcc |
212 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24580120 |
tgcacacatctcttccaaaacatatgcacatgcataccacctccaagaatcaacaatatgttacctactagtcttctataaaacctttgttcattaagcc |
24580219 |
T |
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| Q |
213 |
aaaactttgttcatct |
228 |
Q |
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|||||||||||||||| |
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| T |
24580220 |
aaaactttgttcatct |
24580235 |
T |
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