View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5684_high_44 (Length: 212)
Name: NF5684_high_44
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 5509682 - 5509872
Alignment:
| Q |
1 |
cgtcattgcagaagctgatggagattttgttgacttcatttttggcttccttaccattccattagggtccattttaaagattttaattccgaacattttt |
100 |
Q |
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| T |
5509682 |
cgtcagtgcagaagctgatggagattttattgacttcattcttggcttccttaccattccattagggtccattttaaagattttaatacccaacaatttt |
5509781 |
T |
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| Q |
101 |
cctagatgtgttggtaatttgtacaagagtgtgaagaacttgaatcccatgtctaagttgctccatccttgtattgcaccacactatggtt |
191 |
Q |
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| T |
5509782 |
cctagatgtgttggtaatttgtacaagagtgtgaagaacttgaatcccatgtctgagttgctccatccttgtattgcaccacactatggtt |
5509872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 5489010 - 5489149
Alignment:
| Q |
3 |
tcattgcagaagctgatggagattttgttgacttcatttttggcttccttaccattccattagggtccattttaaagattttaattccgaacatttttcc |
102 |
Q |
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| T |
5489010 |
tcattgcagaagccaatgaagattttgttgacttcatctttagctttcttaccatgccattaggatccattgtaaagcttttgggaccgaactcttttgc |
5489109 |
T |
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| Q |
103 |
tagatgtgttggtaatttgtacaagagtgtgaagaacttg |
142 |
Q |
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| T |
5489110 |
tggatgtgttggtaatttgtacaagagtgtggagaacttg |
5489149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 6 - 142
Target Start/End: Complemental strand, 5458005 - 5457869
Alignment:
| Q |
6 |
ttgcagaagctgatggagattttgttgacttcatttttggcttccttaccattccattagggtccattttaaagattttaattccgaacatttttcctag |
105 |
Q |
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| T |
5458005 |
ttgcagaaactaatggagattttgttgacttcatttttagcttccttgcggtgccattagggtcagttgtaaatcttttaggggctaataattttgctgg |
5457906 |
T |
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| Q |
106 |
atgtgttggtaatttgtacaagagtgtgaagaacttg |
142 |
Q |
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| T |
5457905 |
atgtgttggtaatttgtacaagagtgtggagaacttg |
5457869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 5436101 - 5435977
Alignment:
| Q |
18 |
atggagattttgttgacttcatttttggcttccttaccattccattagggtccattttaaagattttaattccgaacatttttcctagatgtgttggtaa |
117 |
Q |
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| T |
5436101 |
atggagattttgttgacttcattttaagcttccttacggtgccattaggctccattgtaaaacttttaggagctaactcttttgctggatgtgttggtaa |
5436002 |
T |
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| Q |
118 |
tttgtacaagagtgtgaagaacttg |
142 |
Q |
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| T |
5436001 |
tttgtacaagagtgtggtgaacttg |
5435977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 5446718 - 5446603
Alignment:
| Q |
23 |
gattttgttgacttcatttttggcttccttaccattccattagggtccattttaaagattttaattccgaacatttttcctagatgtgttggtaatttgt |
122 |
Q |
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| T |
5446718 |
gattttgttggcttcatttttagcttccttaccatgccattaggatccattgtaaagcttttggatggtaattctattgctggatgtgttggtaatttgt |
5446619 |
T |
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| Q |
123 |
acaagagtgtgaagaa |
138 |
Q |
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| T |
5446618 |
acaagagtgtggagaa |
5446603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 5996560 - 5996507
Alignment:
| Q |
26 |
tttgttgacttcatttttggcttccttaccattccattagggtccattttaaag |
79 |
Q |
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| T |
5996560 |
tttgttgacttcatgtttagcttccttacaataccattagggtccattgtaaag |
5996507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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