View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5684_high_9 (Length: 449)
Name: NF5684_high_9
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 20 - 440
Target Start/End: Complemental strand, 22773884 - 22773464
Alignment:
| Q |
20 |
tgaccttcgcataactagcattcattttaatattgagtgtcagtactgcatatgttttagaattaattttgtatgagtatcattttagttaaaagtttgg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22773884 |
tgaccttcgcataactagcattcattttaatattgagtgtcagtactgcatatgttttagaattaattttgtatgagtatcattttatttaaaagtttgg |
22773785 |
T |
|
| Q |
120 |
tttatgttcactactgcgtcatctgaattaaatgtttgtggcacctaacattcttaaggttctgatctatgagtgagtgttataactagttttgaactaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22773784 |
tttatgttcactactgcgtcatctgaattaaatgtttgtggcacctcacattcttaaggttctgatctatgagtgagtgttataactagttttgaactaa |
22773685 |
T |
|
| Q |
220 |
gttaagtttctcctgtttattttaatatataatcctgccatatggatannnnnnnnnnnnnnngaagtaatatagtttttctgttttttatgacgtagat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22773684 |
gttaagtttctcctgtttattttaatatataatcctgccatatggatatgtgtggtgtgtgtggaagtaatatagtttttctgttttttatgaggtagat |
22773585 |
T |
|
| Q |
320 |
tagaagaagatatgcatgataatttggatcagtattatgtcatacattcatgagattatatccgccatttgttggttttgattcagatttgtttttgagc |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22773584 |
tagaagaagatatgcatgataatttggatcagtattatgtcatccattcatgagattatatctgccatttgttggttttgattcagatttgtttttgagc |
22773485 |
T |
|
| Q |
420 |
attagagtctgttatattctt |
440 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
22773484 |
attagagtctgttattttctt |
22773464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 111 - 440
Target Start/End: Complemental strand, 26081972 - 26081643
Alignment:
| Q |
111 |
aaagtttggtttatgttcactactgcgtcatctgaattaaatgtttgtggcacctaacattcttaaggttctgatctatgagtgagtgttataactagtt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26081972 |
aaagtttggtttatgttcactactgcgtcatctaaattaaatgtttgtggcacctcacattcttaaggttctgatctatgagtgagtgttataactagtt |
26081873 |
T |
|
| Q |
211 |
ttgaactaagttaagtttctcctgtttattttaatatataatcctgccatatggatannnnnnnnnnnnnnngaagtaatatagtttttctgttttttat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26081872 |
ttgaactaagttaagtttctcctgtttattttaatatataatcctgccatatggatatgtgtggtgtgtgtggaagtaatatagtttttctgttttttat |
26081773 |
T |
|
| Q |
311 |
gacgtagattagaagaagatatgcatgataatttggatcagtattatgtcatacattcatgagattatatccgccatttgttggttttgattcagatttg |
410 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26081772 |
gaggtagattagaagaagatatgcattataatttggatcagtattatgtcatccattcatgagattatatctgccatttgttggttttgattcagatttg |
26081673 |
T |
|
| Q |
411 |
tttttgagcattagagtctgttatattctt |
440 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |
|
|
| T |
26081672 |
tttttgagcattagagtctgttattttctt |
26081643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 93 - 388
Target Start/End: Complemental strand, 15856483 - 15856188
Alignment:
| Q |
93 |
tgagtatcattttagttaaaagtttggtttatgttcactactgcgtcatctgaattaaatgtttgtggcacctaacattcttaaggttctgatctatgag |
192 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15856483 |
tgagtatcattttaattaaaagtttggtttatgttaactactgcgtcatctgaattaaatgtttgtggcacctcacattcttaaggttctgatctatgag |
15856384 |
T |
|
| Q |
193 |
tgagtgttataactagttttgaactaagttaagtttctcctgtttattttaatatataatcctgccatatggatannnnnnnnnnnnnnngaagtaatat |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15856383 |
tgagtgttataactagttttgaactaagttaagtttctcctgtttattttaatatataatcctgccatatggatatgtgtggtgtgtgtggaagtaatat |
15856284 |
T |
|
| Q |
293 |
agtttttctgttttttatgacgtagattagaagaagatatgcatgataatttggatcagtattatgtcatacattcatgagattatatccgccatt |
388 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
15856283 |
agtttttctgttttttatgaggtagattagaagaagatatgcatgataatttggatcagtattatgtcatccattcatgagattatatctgccatt |
15856188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 51270161 - 51269959
Alignment:
| Q |
21 |
gaccttcgcataactagcattcattttaatattgagtgtcagtactgcatatgttttagaattaattttgtatgagtatcattttagttaaaagtttggt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
51270161 |
gaccttcgcataactagcattcattttaatattgagtgtcagtactgcatatgttttagaattaattttgtatgagtatcattttagttaaaagtt-ggt |
51270063 |
T |
|
| Q |
121 |
ttatgttcactactgcgtcatctgaattaaatgtttgtggcacctaacattcttaaggttctgatctatgagtgagtgttataactagttttgaactaag |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51270062 |
ttatgttcactactgcgtcatctgaattaaatgtttgtggcacctcacattcttaaggttctgatctatgagtgagtgttataactagttttgaactaag |
51269963 |
T |
|
| Q |
221 |
ttaa |
224 |
Q |
| |
|
|||| |
|
|
| T |
51269962 |
ttaa |
51269959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 283 - 434
Target Start/End: Complemental strand, 51269936 - 51269785
Alignment:
| Q |
283 |
gaagtaatatagtttttctgttttttatgacgtagattagaagaagatatgcatgataatttggatcagtattatgtcatacattcatgagattatatcc |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
51269936 |
gaagtaatatagtttttctgttttttatgaggtagattagaagaagatatgcatgataatttggatcagtattatgtcatccattcatgagattatatct |
51269837 |
T |
|
| Q |
383 |
gccatttgttggttttgattcagatttgtttttgagcattagagtctgttat |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51269836 |
gccatttgttggttttgattcagatttgtttttgagcattagagtctgttat |
51269785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 52476592 - 52476485
Alignment:
| Q |
20 |
tgaccttcgcataactagcattcattttaatattgagtgtcagtactgcatatgttttagaattaattttgtatgagtatcattttagttaaaagtttgg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
52476592 |
tgaccttcgcataactagcattcattttaatattgagtgtcagtactgcatatgttttagaattaattttgtatgagtatcattttaattaaaagtttgg |
52476493 |
T |
|
| Q |
120 |
tttatgtt |
127 |
Q |
| |
|
|||||||| |
|
|
| T |
52476492 |
tttatgtt |
52476485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 180; Significance: 5e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 196 - 440
Target Start/End: Original strand, 40067435 - 40067679
Alignment:
| Q |
196 |
gtgttataactagttttgaactaagttaagtttctcctgtttattttaatatataatcctgccatatggatannnnnnnnnnnnnnngaagtaatatagt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40067435 |
gtgttataactagttttgaactaagttaagtttctcctgtttattttaatatataatcctgccatatggatatgtgtggtgtgtgtggaagtaatatagt |
40067534 |
T |
|
| Q |
296 |
ttttctgttttttatgacgtagattagaagaagatatgcatgataatttggatcagtattatgtcatacattcatgagattatatccgccatttgttggt |
395 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
40067535 |
ttttctgttttttatgaggtagattagaagaagatatgcatcataatttggatcagtattatgtcatccattcatgagattatatctgccatttgttggt |
40067634 |
T |
|
| Q |
396 |
tttgattcagatttgtttttgagcattagagtctgttatattctt |
440 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40067635 |
tttgattcagatttgtttttgagcattagagtctgttattttctt |
40067679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University