View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5684_low_1 (Length: 677)
Name: NF5684_low_1
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 184 - 664
Target Start/End: Original strand, 31980538 - 31981017
Alignment:
| Q |
184 |
aaaagcatcaaagttcattgaattcttatgagttcgtaaatgattgaggttggctctctctctcctaggcttgaatttaattatttaggcttgaaatatt |
283 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
31980538 |
aaaagcatcaaagttcattgaattcttatgcgttcgtaaacgattgaggttggctctctctctcctaggcttgaatttaattagtttggcttgaaatatt |
31980637 |
T |
|
| Q |
284 |
tatgtgagatcaatgtgtattgtgattagtatgagaaaattatgttttaatgaaaaattctcatgacaaattagcttaattcataaactagcttatttgt |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
31980638 |
tatgtgagatcaatgtgtattgtgattagtatgagaaaattaggttttaatgaaaa-ttctcatgtcaaattagcttaattcaaaaactagcttatttgt |
31980736 |
T |
|
| Q |
384 |
gtagcagcaagttttcattacatagaaatgatgattatgaatttgttcccgcccattatataggagctagtattataagtagtcatgctgacctttttac |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
31980737 |
gtagcagcaagttttcattacatagaaatgatgattatgaatttgtgcccgcccattatataggagttagtattataagtagtcatgctaacctttttac |
31980836 |
T |
|
| Q |
484 |
acacacaaatagtatgagaacataactaatgtccatcataatctctatgtacatttgggttgttggtcaaattaggcgacctcgaagaaactaagacatg |
583 |
Q |
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||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31980837 |
acacacaaatagtatgagaacataactgatggccttcataatctctatgtacatttgggttgttggtcaaattaagcgacctcgaagaaactaagacatg |
31980936 |
T |
|
| Q |
584 |
gtttttggttaatttgaaatgctatgatttgggtaatttggaagtggaggaatgataatattttcaataatggagtgatga |
664 |
Q |
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| T |
31980937 |
gtttttggttaatttgaaatgctatgatttgggtaatttggaaggggaggaatgataatattttcaataatggagtgatga |
31981017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 31979295 - 31979507
Alignment:
| Q |
19 |
aatgataattgaaaccctaattgatttaacctttttgttgttgtgttgttacatatgttgattttagttagcaataaccttattggagtagttggaagca |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31979295 |
aatgataattgaaaccctaattgatttaacctttttgttgttgtgttgtta-atgtgttgattt-agttagcaataaccttattggagtagttggaagca |
31979392 |
T |
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| Q |
119 |
tcaaattcaaatggaagtgagtttggagctaaatgttacgtgattgtggaattggggaaaacttgaaaagcatcaaagttcattgaattcttatgagttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31979393 |
tcaaattcaaatggaagtgagtttggagctaaatgtcaagtgattgtggaattggggaaaacttgaaaagcatcaaagttcattgaattcttatgagttc |
31979492 |
T |
|
| Q |
219 |
gtaaatgattgaggt |
233 |
Q |
| |
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| ||| ||||||||| |
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| T |
31979493 |
gaaaacgattgaggt |
31979507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 52628980 - 52629037
Alignment:
| Q |
26 |
attgaaaccctaattgatttaacctttttgttgttgtgttgttacatatgttgatttt |
83 |
Q |
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||||||| |||| ||||||| |||||||||| |||||||||||||| ||| |||||| |
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|
| T |
52628980 |
attgaaaacctagttgattttccctttttgttattgtgttgttacatgtgtggatttt |
52629037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 5e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 27409441 - 27409283
Alignment:
| Q |
19 |
aatgataattgaaaccctaattgatttaacctttttgttgttgtgttgttacatatgttgattttagttagcaataaccttattggagtagttggaagca |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27409441 |
aatgataattgaaaccctaattgatttaacctttttgttgttgtgttgtta-atgtgttgattttagttagcaataaccttattggagtagttggaagca |
27409343 |
T |
|
| Q |
119 |
tcaaattcaaatggaagtgagtttggagctaaatgttacgtgattgtggaattggggaaa |
178 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
27409342 |
tcaaattcaaatggaagtgagtttggagctaaatgtcaagtgattgtggaattggggaaa |
27409283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 40927920 - 40927970
Alignment:
| Q |
19 |
aatgataattgaaaccctaattgatttaacctttttgttgttgtgttgtta |
69 |
Q |
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| T |
40927920 |
aatgagaattgaaaccctaattgattttccctttttgtttttgtgttgtta |
40927970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 35091728 - 35091672
Alignment:
| Q |
282 |
tttatgtgagatcaatgtgtattgtgattagtatgagaaaattatgttttaatgaaa |
338 |
Q |
| |
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||||||| |||| |||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
35091728 |
tttatgttagattaatgggtattgtgattagtatgagaaaattaagttttaatgaaa |
35091672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 337 - 395
Target Start/End: Original strand, 32090825 - 32090883
Alignment:
| Q |
337 |
aaaattctcatgacaaattagcttaattcataaactagcttatttgtgtagcagcaagt |
395 |
Q |
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|||||||||||| ||||||||||||||||| || || ||||||||||||||||||||| |
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| T |
32090825 |
aaaattctcatgttaaattagcttaattcattaattaacttatttgtgtagcagcaagt |
32090883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 7649880 - 7649827
Alignment:
| Q |
19 |
aatgataattgaaaccctaattgatttaacctttttgttgttgtgttgttacat |
72 |
Q |
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| T |
7649880 |
aatgataattgaaaccccgattgatttttcctttttgttgttgtgttcttacat |
7649827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 48505852 - 48505807
Alignment:
| Q |
24 |
taattgaaaccctaattgatttaacctttttgttgttgtgttgtta |
69 |
Q |
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| T |
48505852 |
taattgaaaccctaattgattttccctttttgtttttgtgttgtta |
48505807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 48505920 - 48505870
Alignment:
| Q |
19 |
aatgataattgaaaccctaattgatttaacctttttgttgttgtgttgtta |
69 |
Q |
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||||| ||||||||||||||||||||| || ||||||| ||||||||||| |
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| T |
48505920 |
aatgagaattgaaaccctaattgattttcccattttgtttttgtgttgtta |
48505870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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