View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5684_low_12 (Length: 425)
Name: NF5684_low_12
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_low_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 20 - 414
Target Start/End: Original strand, 35013297 - 35013691
Alignment:
| Q |
20 |
ctaaggggttgatatcacacattttttatgatcaatcttcccttttcatgaatgctgttattgaagaggaataagtagctttgattaattctgtcaaaag |
119 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35013297 |
ctaaggggttgaaatcacacattttttatgatcaatcttcccttttcatgaatgctgttattgaagaggaataagtagctttgattaattctgtcaaaag |
35013396 |
T |
|
| Q |
120 |
ataaagtagctttgatcaattaatgtatcactctatatgtgacaatatatatcatctggctaactaatttagttgcatccagtaatgtcactttctatta |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35013397 |
ataaagtagctttgatcaattaatgtatcactctatatgtgacaatatatatcatctggctaactaatttagttgcatccagtaatgtcactttctatta |
35013496 |
T |
|
| Q |
220 |
attctatactcattcatctcgttctaaactttatttatggtcacttgctacatcaaattaaacacatcctcattttatgatacttgttttcttagcaaaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
35013497 |
attctatactcattcatctcgttctaaactttatttatggtcacttgctacatcaaattaaacacatcctcattttatgctacttgttttcttagcaaaa |
35013596 |
T |
|
| Q |
320 |
gaaaacatgcataatgtttgataagaaaagaagtggaggacattaaataaattcacaagccatatagattattattcacataagatgatgtccat |
414 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35013597 |
gaaaacatgcataatgcttgataagaaaagaagtggaggacattaactaaattcacaagccatatagattattattcacataaaatgatgtccat |
35013691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 74 - 306
Target Start/End: Original strand, 4459487 - 4459716
Alignment:
| Q |
74 |
ctgttattgaagaggaataagtagctttgattaattctgtcaaaagataaagtagctttgatcaattaatgtatcactctatatgtgacaatatatatca |
173 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4459487 |
ctgttattgaagaggaatgagtagct---attaattctgtcaaaagataaagtagctttgatcaattaatgtatcactctatatgtgacaatatatatca |
4459583 |
T |
|
| Q |
174 |
tctggctaactaatttagttgcatccagtaatgtcactttctattaattctatactcattcatctcgttctaaactttatttatggtcacttgctacatc |
273 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| |
|
|
| T |
4459584 |
tctggctaactaatttagttacatccagtaatttcactttctattaattctatactcattcaccccgttgtaaactttatttatggtcacttgctacatc |
4459683 |
T |
|
| Q |
274 |
aaattaaacacatcctcattttatgatacttgt |
306 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||| |
|
|
| T |
4459684 |
aaattaaacacattctcattttatgctacttgt |
4459716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University