View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5684_low_14 (Length: 416)
Name: NF5684_low_14
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_low_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 178; Significance: 7e-96; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 13 - 320
Target Start/End: Original strand, 4566147 - 4566443
Alignment:
| Q |
13 |
aatatcaaactaattttaacaaatctgaaactatatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatcaaacaaaatcttca |
112 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4566147 |
aatattaaactaattttaacaaatctgaaactacatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatcaaacaaaatcttca |
4566246 |
T |
|
| Q |
113 |
tatgctttagtcnnnnnnnggaaaatcttcatatgcgtgt-agtttcaaaattgaactagatgacacttttattctagtaagtgtaagatagttctgaca |
211 |
Q |
| |
|
||||||| || ||| | || ||| ||| | |||||||||||||||||||| | ||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
4566247 |
tatgctt--gt--------ggaccaactctata--cgtttcagtttcaaaattgaactagaaggcacttctattcaagtaagtataagatagttctgaca |
4566334 |
T |
|
| Q |
212 |
tcaaagatttttgttgtacaaagaaaataatcatgaccacttatttattttataatagtctattggttattattttccatgcttgaatgagtcagacatt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
4566335 |
tcaaagatttttgttgtacaaagaaaataattatgtccacttatttattttataatagtctattggctattattttccatgcttgaatcagtcagacatt |
4566434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 4573167 - 4573457
Alignment:
| Q |
19 |
aaactaattttaacaaatctgaaactatatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatcaaacaaaatcttcatatgct |
118 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4573167 |
aaactaatttcaacaaatatgaaactatatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatcaaacaaaatcttcatatgct |
4573266 |
T |
|
| Q |
119 |
ttagtcnnnnnnnggaaaatcttcatatgcgtgt-agtttcaaaattgaactagatgacacttttattctagtaagtgtaagatagttctgacatcaaag |
217 |
Q |
| |
|
| || ||| | || ||| ||| | |||||||||||||||||||| ||||||| ||||| |||| | | |||||||||||||||||| |
|
|
| T |
4573267 |
t--gt--------ggaccaactctata--cgtttcagtttcaaaattgaactagaagacacttctattcaagtataagatatatagttctgacatcaaag |
4573354 |
T |
|
| Q |
218 |
atttttgttgtacaaagaaaataatcatgaccacttatttattttataatagtctattggttattattttccatgcttgaatgagtcagacattggacat |
317 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4573355 |
atttttgttgtacaaagaaaataattatgaccacttatttattttataatagtctattggctattattttccatgcttgaatcagtcagacattggacat |
4573454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 153 - 320
Target Start/End: Original strand, 4559418 - 4559585
Alignment:
| Q |
153 |
agtttcaaaattgaactagatgacacttttattctagtaagtgtaagatagttctgacatcaaagatttttgttgtacaaagaaaataatcatgaccact |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4559418 |
agtttcaaaattgaactagatgacacttttattcaagtaagtgtaagatagttctgacatcaaagatttttgttgtacaaagaaaataatcatgaccact |
4559517 |
T |
|
| Q |
253 |
tatttattttataatagtctattggttattattttccatgcttgaatgagtcagacattggacatcac |
320 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4559518 |
tatttattttataatagtctattggctattattttccatgcttgaatcagtcagacattggacatcac |
4559585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 4559254 - 4559365
Alignment:
| Q |
13 |
aatatcaaactaattttaacaaatctgaaactatatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatcaaacaaaatcttca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4559254 |
aatatcaaactaattttaacaaatctgaaactatatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatcaaacaaaatcttca |
4559353 |
T |
|
| Q |
113 |
tatgctttagtc |
124 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4559354 |
tatgctttagtc |
4559365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 341 - 400
Target Start/End: Original strand, 4560209 - 4560268
Alignment:
| Q |
341 |
acaatttgcatttgcatcatcggtgaatgtttttgaatgttcatagaggaaagaaccttt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4560209 |
acaatttgcatttgcatcatcggtgaatgtttttgaatgttcatagaggaaagaaacttt |
4560268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 383
Target Start/End: Original strand, 4567935 - 4567977
Alignment:
| Q |
341 |
acaatttgcatttgcatcatcggtgaatgtttttgaatgttca |
383 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
4567935 |
acaatttgcatttgcaacatcagtgaatgtttttgaatgttca |
4567977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 4615168 - 4615237
Alignment:
| Q |
33 |
aaatctgaaactatatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatcaaaca |
103 |
Q |
| |
|
|||||| ||||||||||||| | |||| ||||||| ||| |||||||||||| | ||||||| |||||||| |
|
|
| T |
4615168 |
aaatctcaaactatatctaaaaaatacatgcatggcattccaaccattcagt-ggaagatatcatcaaaca |
4615237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 16685033 - 16684943
Alignment:
| Q |
33 |
aaatctgaaactatatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatcaaacaaaatcttcatatgctttagt |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16685033 |
aaatctgaaactatatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatcaaacaaaatcttcatatgctttagt |
16684943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 161 - 298
Target Start/End: Complemental strand, 16684881 - 16684742
Alignment:
| Q |
161 |
aattgaactagatgacacttttattctagta--agtgtaagatagttctgacatcaaagatttttgttgtacaaagaaaataatcatgaccacttattta |
258 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||| ||| ||||| | |||| |||||||| | ||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
16684881 |
aattgaactagaagacacttgtattccagtacaagtataagacacttctcacatcaaacacttttgttgtacaaagaaaataattatgtccacttattta |
16684782 |
T |
|
| Q |
259 |
ttttataatagtctattggttattattttccatgcttgaa |
298 |
Q |
| |
|
|||||| ||||||| |||| |||||||||||||||||||| |
|
|
| T |
16684781 |
ttttatgatagtcttttggctattattttccatgcttgaa |
16684742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University