View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5684_low_18 (Length: 364)
Name: NF5684_low_18
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 1890788 - 1891143
Alignment:
| Q |
1 |
atcatgtctttgttgcctatgcttatgctattggtactgctattctccttcctatcacnnnnnnnagaagaaggtaagtttgtcagaatcacggtgttag |
100 |
Q |
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| T |
1890788 |
atcatgtctttgttgcctatgcttatgctattggtactgctattctccttcctatcactttttttagaagaaggtaagtttgtcagaatcacggtgttag |
1890887 |
T |
|
| Q |
101 |
aacaacatatgtatataacaacttagtacatgtttagattgacggtaaatttgtcaggttcatcacactgtaccatcgagattttgacaaaaaacagttt |
200 |
Q |
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| T |
1890888 |
aacaacatatgtatacaacaacttagtacatgtttagattgacggtaaatttgtcaggttcatcacactgtaccatcaagattttgacaaaaaacagttt |
1890987 |
T |
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| Q |
201 |
tggaaactgatcgtcatttcaaacttacacttagcaattacatttcacttaacaaaagttatagtgccttcgtgattttgtcaaactataagcgatttca |
300 |
Q |
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|||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| |
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| T |
1890988 |
tggaaactcatcgtgatttgaaacttacacttagcaattacatttcacttaacaaaagttacagtatcttcgtgattttgtcaaactatatgcgatttca |
1891087 |
T |
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| Q |
301 |
aacacgcacttagtatttatacagactaatttcttcttgttttttctgatgatgtc |
356 |
Q |
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| T |
1891088 |
aacacgcacttagtatttatacagactaatttcttcttgttttttcttatgatgtc |
1891143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 1884144 - 1884245
Alignment:
| Q |
1 |
atcatgtctttgttgcctatgcttatgctattggtactgctattctccttcctatcacnnnnnnnagaagaaggtaagtttgtcagaatcacggtgttag |
100 |
Q |
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||||||||||||||||||||||||||||| ||| ||| || |||||||||||||||| ||||||||||||||||| |||||||||| ||||| |
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| T |
1884144 |
atcatgtctttgttgcctatgcttatgctgttgcaacttcttttctccttcctatcactttttttagaagaaggtaagtttgacagaatcacgacgttag |
1884243 |
T |
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| Q |
101 |
aa |
102 |
Q |
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|| |
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| T |
1884244 |
aa |
1884245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 1878135 - 1878189
Alignment:
| Q |
4 |
atgtctttgttgcctatgcttatgctattggtactgctattctccttcctatcac |
58 |
Q |
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|||| ||||||||||||||||||||| |||||||| || |||||||||||||||| |
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| T |
1878135 |
atgtttttgttgcctatgcttatgctgttggtacttctgttctccttcctatcac |
1878189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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