View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5684_low_2 (Length: 658)
Name: NF5684_low_2
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 1 - 658
Target Start/End: Complemental strand, 38771047 - 38770390
Alignment:
| Q |
1 |
tgactgagactgtttaatttaaggaactaaatcgctaattcgcaaatttgaccaactcttactatttcaaggactaaaatgttgatttactcttactcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38771047 |
tgactgagactgtttaatttaaggaactaaatcgctaatttgcaaatttgaccaactcttactatttcaaggactaaaatgttgatttactcttactcta |
38770948 |
T |
|
| Q |
101 |
ttattactatacatgtataccttttttaaatgttggtgtgtgaacacattcccacatggattgctaggattaatgaggaccatagcaacagtgttctcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38770947 |
ttattactatacatgtataccttttttaaatgttggtgtgtgaacacattcccacatggattgctaggattaatgaggaccatagcaacagtgttctcat |
38770848 |
T |
|
| Q |
201 |
ctgttaaggcttcaacggaatcaaggtcaacttcccatcctctttgagaaagaagatcgaagtagcgaacttcaaggagacaagaagcagcacgagaatc |
300 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38770847 |
ctgttaaggcttcaatggaatcaaggtcaacttcccatcttctttgaggaagaagatcgaagtagcgaacttcaaggagacaagaagcagcacgagaatc |
38770748 |
T |
|
| Q |
301 |
atattgtgggtagcctggtcttggaaggagaatgttggcaccgggacgtgcaagaacaggtaagattatatctatagcctgtgttccaccaactgtgaga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38770747 |
atattgtgggtagcctggtcttggaaggagaatgttggcaccaggacgtgcaagaacaggtaagattatatctatagcctgtgttccaccaactgtgaga |
38770648 |
T |
|
| Q |
401 |
aaaatatcttctggtgataactggtatggaagatcagatgagaggtattttgcaatagccctgtttttatttttggaaggtcagcatattaagaaatcaa |
500 |
Q |
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| T |
38770647 |
aaaatatcttctggtgataactggtatggaagatcagatgagaggtactttgcaatagccctgtttttatttttggaaggccagcatattaagaaatcaa |
38770548 |
T |
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| Q |
501 |
caaaaaatctgtcaaattgnnnnnnnnnnnnggattaccaaataccatcattattcataccaattgttcacaaggaatggagtagtataatctcaaattg |
600 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38770547 |
caaaaaatctgtcaaattgtttttgttttttggattaccaaataccatcattattcataccaatagttcacaaggaatggagtagtataatctcaaattg |
38770448 |
T |
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| Q |
601 |
aacttaaaaaattgaatgtcgttcatggtcttggaagatgaattataagtgtgtatat |
658 |
Q |
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| T |
38770447 |
aacttaaaaaattgaatgtcgttcatggtcttggaagatgaattataagtgtgtatat |
38770390 |
T |
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Back To:
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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 31596709 - 31596671
Alignment:
| Q |
54 |
aactcttactatttcaaggactaaaatgttgatttactc |
92 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |
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| T |
31596709 |
aactcttactatttcaaggactaaaatgctgatttactc |
31596671 |
T |
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