View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5684_low_21 (Length: 333)
Name: NF5684_low_21
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 10875439 - 10875734
Alignment:
| Q |
18 |
acatgttctgttctattctctttgattccaatccatttatgtagaaccaaaatgtatcacttttcttacctttttcccccttctattgtgtatta-tata |
116 |
Q |
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| T |
10875439 |
acatgttctgttctattctctttgattccaatccatttatgtagaaccaaaatgtatcacttttcttacctttttcccccttctattgtgtattaatata |
10875538 |
T |
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| Q |
117 |
caccaatttatcctgttgtgtattatttctaacttgtctctcaaatgaatggatattgaaagtatttatgttattaagtctgaaataatcgtgaactata |
216 |
Q |
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| T |
10875539 |
cacca-------------tgtattgtttctaacttgtctctcaaatgaatggatattgaaagtatttacgttattaagtctgaaataatcgtgaactata |
10875625 |
T |
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| Q |
217 |
aagaagaatggaaacatgtataaatggtcgagtgtgagttatgttagaagtctggctgaacaaagaagagtggatgcaatgtgtattttgagaggccgcc |
316 |
Q |
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| T |
10875626 |
aagaagaatggaaacatgtataaatggtcgagtgtgagttatgttagaagtctggctgaacaaagaagagtggatgcaatgtgtattttgagaggccgcc |
10875725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 10862786 - 10862879
Alignment:
| Q |
21 |
tgttctgttctattctctttgattccaatccatttatgtagaaccaaaatgtatcacttttcttacctttttcccccttctattgtgtattatat |
115 |
Q |
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| T |
10862786 |
tgttctattctagtctctttggttccac-ccatttatgtagaaccaatatctatcacctttcttacctgttgaccccttctattgtgtattatat |
10862879 |
T |
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