View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5684_low_25 (Length: 307)
Name: NF5684_low_25
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_low_25 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 42268577 - 42268282
Alignment:
| Q |
11 |
catcagccaccactcgcatcaccgttaactcaagatgagccagacgagacaaaacaaacaaaaacactcaatgaatacacagtagagagctccacaaaac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42268577 |
catcagccaccactcgcatcaccgttaactcaagatgagccagacgagacaaaacaaacaaaaacactcaatgaatacacagtagagagctccacaaaac |
42268478 |
T |
|
| Q |
111 |
aacgaaatggacaagtctatatgagtcggacccaacacaattacctcccaatacagtcacctcccgaaaattgaaaacacaacaagataatctctaagct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42268477 |
aacgaaatggacaagtctatatgagtcggatccaacacaattacctcccaatacagtcacctcccgaaaattgaaaacacaacaagataatctctaagct |
42268378 |
T |
|
| Q |
211 |
cctaataccaccacaagtaccacccaaagagaataaatttcctcaaaagtaaacttcaactgcatcaacagacaacaaaataaactccctataccac |
307 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42268377 |
gctaataccaccacaagtacc-tccaaagagaataaatttcctcaaaagtaaacttcaactgcatcaaaagacaacaaaataaactccctataccac |
42268282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 11 - 272
Target Start/End: Original strand, 24718380 - 24718623
Alignment:
| Q |
11 |
catcagccaccactcgcatcaccgttaactcaagatgagccagacgagacaaaacaaacaaaaacactcaatgaatacacagtagagagctccacaaaac |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| | | |||||||||||||||||||||||||||||| |
|
|
| T |
24718380 |
catcaaccaccactcgcatcaccgttaactcaagatgagccggacgagacaaaataaaaaaaagcccc--atgaatacacagtagagagctccacaaaac |
24718477 |
T |
|
| Q |
111 |
aacgaaatggacaagtctata-tgagtcggacccaacacaattacctcccaatacagtcacctcccgaaaattgaaaacacaacaagataatctctaagc |
209 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
24718478 |
aacgaaatagacaagtctatattgagtcggacccaac----------------acagtcacctcccgaaaattgaaaacacaactgaataaactctaagc |
24718561 |
T |
|
| Q |
210 |
tcctaataccaccacaagtaccacccaaagagaataaatttcctcaaaagtaaacttcaactg |
272 |
Q |
| |
|
||| ||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
24718562 |
tcccaataccaccacaagtacca-ccaacgagaataaatttcctcaaaagtaaacatcaactg |
24718623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 43032238 - 43032103
Alignment:
| Q |
17 |
ccaccactcgcatcaccgttaactcaagatgagccagacgagacaaaacaaacaaaaacactcaatgaatacacagtagagagctccacaaaacaacgaa |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| ||||| | ||||| |||| || ||| |
|
|
| T |
43032238 |
ccaccactcacatcaccgttaactcaagatgagccggacgagacaaaacaaac-aaaacactccatgaatacatagtaggaaactccataaaaaaatgaa |
43032140 |
T |
|
| Q |
117 |
atggacaagtctatatgagtcggacccaacacaatta |
153 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
43032139 |
atggacaagtctagatgagccggacccaacacaatta |
43032103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 21 - 305
Target Start/End: Original strand, 9910998 - 9911298
Alignment:
| Q |
21 |
cactcgcatcaccgttaactcaagatgagccagacgagacaaaacaaacaaaaacactcaatgaatacacagtagagagctccacaaaacaacgaaatgg |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| |||||||| | ||||| |||| ||| |||||| |
|
|
| T |
9910998 |
cactcgcatcaccgttaactcaagatgagccagacgagacagaacaaacaaaa-cactccatgaattcacagtaggaaactccataaaaaaacaaaatgg |
9911096 |
T |
|
| Q |
121 |
acaagtctatatgagtcggaccca------------------acacaattacctcccaatacagtcacctcccgaaaattgaaaacacaacaagataatc |
202 |
Q |
| |
|
||||||||| ||||| || ||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||| |||| | |
|
|
| T |
9911097 |
acaagtctagatgagccgaacccaacacaattaacactcccaacacaattacctcccaatacagtcacctctcgaaaattaaaaacacaacaaaataaac |
9911196 |
T |
|
| Q |
203 |
tctaagctcctaataccaccacaagtaccacccaaagagaataaatttcctcaaaagtaaacttca-ac-tgcatcaacagacaacaaaataaactccct |
300 |
Q |
| |
|
|||||| ||| ||||||||||||||||||| |||||||||||||||| |||||||| |||| |||| || || ||||| |||||||||||||||||||| |
|
|
| T |
9911197 |
tctaaggtcccaataccaccacaagtacca-ccaaagagaataaattccctcaaaa-taaa-ttcacacatggatcaaaagacaacaaaataaactccca |
9911293 |
T |
|
| Q |
301 |
atacc |
305 |
Q |
| |
|
||||| |
|
|
| T |
9911294 |
atacc |
9911298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 2077185 - 2077050
Alignment:
| Q |
17 |
ccaccactcgcatcaccgttaactcaagatgagccagacgagacaaaacaaacaaaaacactcaatgaatacacagtagagagctccacaaaacaacgaa |
116 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| ||||| ||||||||||||||| || |||||||| | |||||| |
|
|
| T |
2077185 |
ccaccactcgcatcactgttaactcaagatgagccgaacgagacaaaacaaactaaa-cactccatgaatacacagtagggaactccacaataaaacgaa |
2077087 |
T |
|
| Q |
117 |
atggacaagtctatatgagtcggacccaacacaatta |
153 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
2077086 |
atggacaagtctagatgagccggacccaacacaatta |
2077050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 307
Target Start/End: Complemental strand, 2070667 - 2070595
Alignment:
| Q |
236 |
aaagagaataaatttcctcaaaagtaaacttc-aactgcatcaacagacaacaaaataaactccctataccac |
307 |
Q |
| |
|
|||||||||||||| |||||||| |||||| | ||||||||| | |||||||||||||||||||| ||||||| |
|
|
| T |
2070667 |
aaagagaataaattccctcaaaaataaactaccaactgcatccaaagacaacaaaataaactcccaataccac |
2070595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 307
Target Start/End: Complemental strand, 2075013 - 2074941
Alignment:
| Q |
236 |
aaagagaataaatttcctcaaaagtaaacttc-aactgcatcaacagacaacaaaataaactccctataccac |
307 |
Q |
| |
|
|||||||||||||| |||||||| |||||| | ||||||||| | |||||||||||||||||||| ||||||| |
|
|
| T |
2075013 |
aaagagaataaattccctcaaaaataaactaccaactgcatccaaagacaacaaaataaactcccaataccac |
2074941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 31699595 - 31699676
Alignment:
| Q |
17 |
ccaccactcgcatcaccgttaactcaagatgagccagacgagacaaaacaaaca---aaaacactcaatgaatacacagtag |
95 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||| | |||||||||||||||||| ||||||||| |||||||| |||||| |
|
|
| T |
31699595 |
ccaccacttgcatcagcgttaactcaagatgagtcggacgagacaaaacaaacaaacaaaacactccatgaatacgcagtag |
31699676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 67201 - 67137
Alignment:
| Q |
11 |
catcagccaccactcgcatcaccgttaactcaagatgagccagacgagacaaaacaaacaaaaac |
75 |
Q |
| |
|
||||| ||||||| ||||| ||||||| |||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
67201 |
catcaaccaccacccgcataaccgttatctcaagatgagctggacgatacaaatcaaacaaaaac |
67137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 23636144 - 23636185
Alignment:
| Q |
266 |
tcaactgcatcaacagacaacaaaataaactccctataccac |
307 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
23636144 |
tcaactgcatcaaaagacagcaaaataaactcccaataccac |
23636185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University