View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5684_low_27 (Length: 295)
Name: NF5684_low_27
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 29140610 - 29140333
Alignment:
| Q |
1 |
agtcaggacttctggtatagctgctaatcaaatctttctcaagcaaattgtcgaatgtgcttcggtttattggatggaatctttgtaagtgaattccgtt |
100 |
Q |
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| T |
29140610 |
agtcaggacttctggtatagctgctaatcaaatctttctcaagcaaattgtcgaatgtgcttcggtttattggatggaatctttgtaagtgaattccatt |
29140511 |
T |
|
| Q |
101 |
tgaggtttttaacaaaagaggagattttctcttcatggtttcatcatccaaggctaaaagggtatgtaattggagaatcgaactaattgctagtgcctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29140510 |
tgaggtttttaacaaaagaggagattttctcttcatggtttcatcatccaaggctaaaagggtatgtaattggagaatcgaactaattgctagtgcctcc |
29140411 |
T |
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| Q |
201 |
ccggttttaacacgaagtttctcaaaatcaaggttttccaatttgctgacaacaggattgaattggaatggtgtatct |
278 |
Q |
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| T |
29140410 |
ccggttttaacacgaagtttctcaaaatcaaggttttccaatttgctgacaacaggattgaattggaatggtgtatct |
29140333 |
T |
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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 140 - 278
Target Start/End: Original strand, 2086040 - 2086178
Alignment:
| Q |
140 |
ttcatcatccaaggctaaaagggtatgtaattggagaatcgaactaattgctagtgcctccccggttttaacacgaagtttctcaaaatcaaggttttcc |
239 |
Q |
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||||||||||||||| ||||||| |||||| || ||||| |||||||| || || ||||| |||||||| ||||||||||| ||||||||||| ||||| |
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| T |
2086040 |
ttcatcatccaaggccaaaagggaatgtaactgcagaatagaactaatagcaagcgcctcgccggttttcacacgaagtttgtcaaaatcaagattttct |
2086139 |
T |
|
| Q |
240 |
aatttgctgacaacaggattgaattggaatggtgtatct |
278 |
Q |
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| T |
2086140 |
agcttgctaagaacagggttgaattggaatggtatatct |
2086178 |
T |
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