View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5684_low_30 (Length: 273)

Name: NF5684_low_30
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5684_low_30
NF5684_low_30
[»] chr2 (3 HSPs)
chr2 (1-267)||(18245639-18245905)
chr2 (1-267)||(18252743-18253009)
chr2 (1-267)||(18256559-18256825)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 18245639 - 18245905
Alignment:
Q  1 caaatggccccgccggatattcttgcaaaacaccatcaaaagtaaccgaaaatgacttcgcctaccacggcctagctgcagccggaaacacctcaaacat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18245639 caaatggccccgccggatattcttgcaaaacaccatcaaaagtaaccgaaaatgacttcgcctaccacggcctagctgcagccggaaacacctcaaacat 18245738  T
Q  101 tatcaaagcagctgtgacccctgcattcgacgcgcaatttgctggtttaaacggtcttggaatttcccttgcgcgtttagatttagccgcaggtggagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18245739 tatcaaagcagctgtgacccctgcattcgacgcgcaatttgctggtttaaacggtcttggaatttcccttgcgcgtttagatttagccgcaggtggagtt 18245838  T
Q  201 attccacttcacactcaccccggtgcttcggaggtgttggttgttattcaaggaacaatctgtgctg 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18245839 attccacttcacactcaccccggtgcttcggaggtgttggttgttattcaaggaacaatctgtgctg 18245905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 18252743 - 18253009
Alignment:
Q  1 caaatggccccgccggatattcttgcaaaacaccatcaaaagtaaccgaaaatgacttcgcctaccacggcctagctgcagccggaaacacctcaaacat 100  Q
    |||||||||| || ||||||||||||||| ||||||||||||||||||  |||||||||| ||||||||||||||| ||||| ||||||||| |||||||    
T  18252743 caaatggcccggctggatattcttgcaaaccaccatcaaaagtaaccgtgaatgacttcgtctaccacggcctagccgcagctggaaacaccacaaacat 18252842  T
Q  101 tatcaaagcagctgtgacccctgcattcgacgcgcaatttgctggtttaaacggtcttggaatttcccttgcgcgtttagatttagccgcaggtggagtt 200  Q
    ||||||||| ||||| ||| ||||| | ||||| |||||| | ||| |||||||||||||||||||| |||| ||||||||| ||||||  ||||| |||    
T  18252843 tatcaaagccgctgttaccactgcaatagacgcacaatttcccggtgtaaacggtcttggaatttccattgctcgtttagatatagccgttggtggtgtt 18252942  T
Q  201 attccacttcacactcaccccggtgcttcggaggtgttggttgttattcaaggaacaatctgtgctg 267  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||| ||||||    
T  18252943 attccacttcacacacaccccggtgcttcggaagtgttggttgttattaaaggaacaatcagtgctg 18253009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 18256825 - 18256559
Alignment:
Q  1 caaatggccccgccggatattcttgcaaaacaccatcaaaagtaaccgaaaatgacttcgcctaccacggcctagctgcagccggaaacacctcaaacat 100  Q
    |||||||||| || ||||||||||||||| ||||||||||||||||||  |||||||||| ||||||||||||||| ||||| ||||||||| |||||||    
T  18256825 caaatggcccggctggatattcttgcaaaccaccatcaaaagtaaccgtgaatgacttcgtctaccacggcctagccgcagctggaaacaccacaaacat 18256726  T
Q  101 tatcaaagcagctgtgacccctgcattcgacgcgcaatttgctggtttaaacggtcttggaatttcccttgcgcgtttagatttagccgcaggtggagtt 200  Q
    ||||||||| ||||| ||| ||||| | ||||| |||||| | ||| |||||||||||||||| ||| |||| ||||||||| |||||| |||||| |||    
T  18256725 tatcaaagccgctgttaccactgcaatagacgcacaatttcccggtgtaaacggtcttggaatatccattgcacgtttagatatagccgtaggtggtgtt 18256626  T
Q  201 attccacttcacactcaccccggtgcttcggaggtgttggttgttattcaaggaacaatctgtgctg 267  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||| ||||||    
T  18256625 attccacttcacacacaccccggtgcttcggaagtgttggttgttattaaaggaacaatcagtgctg 18256559  T

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