View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5684_low_34 (Length: 259)

Name: NF5684_low_34
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5684_low_34
NF5684_low_34
[»] chr5 (1 HSPs)
chr5 (1-244)||(42268062-42268305)
[»] chr1 (4 HSPs)
chr1 (114-244)||(2070489-2070618)
chr1 (114-244)||(2074835-2074964)
chr1 (1-116)||(2070288-2070403)
chr1 (1-116)||(2074634-2074749)
[»] chr8 (2 HSPs)
chr8 (114-242)||(23636164-23636292)
chr8 (27-116)||(23636378-23636467)
[»] chr7 (2 HSPs)
chr7 (1-115)||(24718621-24718737)
chr7 (1-105)||(43031952-43032055)
[»] chr3 (1 HSPs)
chr3 (1-71)||(31699680-31699750)
[»] chr2 (1 HSPs)
chr2 (163-244)||(9911277-9911354)


Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 42268062 - 42268305
Alignment:
Q  1 atctttttcgtcacatcgtcgcctgtgttttctctcttttgggttgtacaatcaaacatgagtaatcctccacagttattgctcttgggttgctgttatc 100  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||| || ||||||||||||||||||||||    
T  42268062 atcttttccgtcacatcgtcccctgtgttttctctcttttgggttgtacaatcaaacatgactaatgctccacaattgttgctcttgggttgctgttatc 42268161  T
Q  101 gagatcggattccaggatcaaggtgtcgtgctctgtttgtacgtactttgaaggtgttgagcttggatggtattttagtcatattgtgttttccattttt 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42268162 gagatcggattccaggatcaaggtgtcgtgctctatttgtacgtactttgaaggtgttgagcttggatgatattttagtcatattgtgttttccattttt 42268261  T
Q  201 tgggaggttattgtgatggggtggtatagggagtttattttgtt 244  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  42268262 tgggaggttattatgatggggtggtatagggagtttattttgtt 42268305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 114 - 244
Target Start/End: Original strand, 2070489 - 2070618
Alignment:
Q  114 aggatcaaggtgtcgtgctctgtttgtacgtactttgaaggtgttgagcttggatggtattttagtcatattgtgttttccattttttgggaggttattg 213  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| |||| ||||||||||||||||||||||||||||||||    
T  2070489 aggatcaaggtgtcgtgctctgtttgtacgtattttgaaggtgttgagtttgga-ggtatttgagtcctattgtgttttccattttttgggaggttattg 2070587  T
Q  214 tgatggggtggtatagggagtttattttgtt 244  Q
    |||||||||||||| ||||||||||||||||    
T  2070588 tgatggggtggtattgggagtttattttgtt 2070618  T

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Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 114 - 244
Target Start/End: Original strand, 2074835 - 2074964
Alignment:
Q  114 aggatcaaggtgtcgtgctctgtttgtacgtactttgaaggtgttgagcttggatggtattttagtcatattgtgttttccattttttgggaggttattg 213  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| |||| ||||||||||||||||||||||||||||||||    
T  2074835 aggatcaaggtgtcgtgctctgtttgtacgtattttgaaggtgttgagtttgga-ggtatttgagtcctattgtgttttccattttttgggaggttattg 2074933  T
Q  214 tgatggggtggtatagggagtttattttgtt 244  Q
    |||||||||||||| ||||||||||||||||    
T  2074934 tgatggggtggtattgggagtttattttgtt 2074964  T

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Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 2070288 - 2070403
Alignment:
Q  1 atctttttcgtcacatcgtcgcctgtgttttctctcttttgggttgtacaatcaaacatgagtaatcctccacagttattgctcttgggttgctgttatc 100  Q
    ||||||||| |||| |||| || ||||||||||||||||||||||||||||||||||| |||||| ||||||| ||| ||||| ||||||||||||||||    
T  2070288 atctttttcttcacgtcgtggcatgtgttttctctcttttgggttgtacaatcaaacacgagtaaccctccaccgttgttgcttttgggttgctgttatc 2070387  T
Q  101 gagatcggattccagg 116  Q
    ||||||||||||||||    
T  2070388 gagatcggattccagg 2070403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 2074634 - 2074749
Alignment:
Q  1 atctttttcgtcacatcgtcgcctgtgttttctctcttttgggttgtacaatcaaacatgagtaatcctccacagttattgctcttgggttgctgttatc 100  Q
    ||||||||| |||| |||| || ||||||||||||||||||||||||||||||||||| |||||| ||||||| ||| ||||| ||||||||| ||||||    
T  2074634 atctttttcttcacgtcgtggcatgtgttttctctcttttgggttgtacaatcaaacacgagtaaccctccaccgttgttgcttttgggttgcagttatc 2074733  T
Q  101 gagatcggattccagg 116  Q
    ||||||||||||||||    
T  2074734 gagatcggattccagg 2074749  T

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Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 114 - 242
Target Start/End: Complemental strand, 23636292 - 23636164
Alignment:
Q  114 aggatcaaggtgtcgtgctctgtttgtacgtactttgaaggtgttgagcttggatggtattttagtcatattgtgttttccattttttgggaggttattg 213  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||  ||| |||||  |||||||||||||||||||||||||    
T  23636292 aggatcaaggtgtcgtgatctgtttgtacgtattttgaaggtgttgagtttggatggtatttgggtcctattgcattttccattttttgggaggttattg 23636193  T
Q  214 tgatggggtggtatagggagtttattttg 242  Q
     ||||||||||||| ||||||||||||||    
T  23636192 cgatggggtggtattgggagtttattttg 23636164  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 23636467 - 23636378
Alignment:
Q  27 gttttctctcttttgggttgtacaatcaaacatgagtaatcctccacagttattgctcttgggttgctgttatcgagatcggattccagg 116  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| |||  || || | |||||||||||||||||||||||| ||||||||    
T  23636467 gttttctctcttttgggttgtactatcaaacatgagtaacccttcacctttgttacccttgggttgctgttatcgagatcgtattccagg 23636378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 24718737 - 24718621
Alignment:
Q  1 atctttttcgtcacatcgtcgcctgtgttttctctcttttgggttgtacaatcaa--acatgagtaatcctccacagttattgctcttgggttgctgtta 98  Q
    ||||||| |||||| |||||||||| |||||||||||||||||||||||||||||  ||| ||||||||||||||  || |||||||||||||| |||||    
T  24718737 atcttttccgtcacgtcgtcgcctgcgttttctctcttttgggttgtacaatcaaacacacgagtaatcctccacgcttgttgctcttgggttgttgtta 24718638  T
Q  99 tcgagatcggattccag 115  Q
    ||| |||||||||||||    
T  24718637 tcgtgatcggattccag 24718621  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 43031952 - 43032055
Alignment:
Q  1 atctttttcgtcacatcgtcgcctgtgttttctctcttttgggttgtacaatcaaacatgagtaatcctccacagttattgctcttgggttgctgttatc 100  Q
    ||||||| | |||| | ||||| || |||||||||||||||| || |||||||||||| |||||| ||| ||| ||| ||||||||| ||||||||||||    
T  43031952 atcttttccttcacgttgtcgcatgcgttttctctcttttggattatacaatcaaacacgagtaa-ccttcactgttgttgctcttgagttgctgttatc 43032050  T
Q  101 gagat 105  Q
    |||||    
T  43032051 gagat 43032055  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 31699750 - 31699680
Alignment:
Q  1 atctttttcgtcacatcgtcgcctgtgttttctctcttttgggttgtacaatcaaacatgagtaatcctcc 71  Q
    ||||||| |||||  ||||| ||||  ||||||||||||||||||||||||||||||| |||||| |||||    
T  31699750 atcttttccgtcatgtcgtcacctgcattttctctcttttgggttgtacaatcaaacacgagtaaccctcc 31699680  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 9911354 - 9911277
Alignment:
Q  163 ttggatggtattttagtcatattgtgttttccattttttgggaggttattgtgatggggtggtatagggagtttattttgtt 244  Q
    |||||||||||||  ||| |||| |||| ||||||||||||||||||||| |||||    ||||| ||||||||||||||||    
T  9911354 ttggatggtatttgggtcctattatgttctccattttttgggaggttattatgatg----ggtattgggagtttattttgtt 9911277  T

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