View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5684_low_38 (Length: 251)
Name: NF5684_low_38
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 55 - 241
Target Start/End: Original strand, 24985262 - 24985448
Alignment:
| Q |
55 |
gtaggattgtggagagtgtaggggaaggagtgaatgacttgaaagaaaatgacaaggtggtgctaatattcaatggtgagtgtggtgagtgtaagtgttg |
154 |
Q |
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| T |
24985262 |
gtaggattgtggaaagtgtaggggaaggagtgaatgacatgaaagaaaatgacaaagtggtgctaatattcaatggtgagtgtggtgagtgtaagtgctg |
24985361 |
T |
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| Q |
155 |
catgtgcaagaaaaccaacatgtgtgagaaatctggagtagacccaatgaagaagttaatgtgtgatggaacaagtagatattcttc |
241 |
Q |
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| T |
24985362 |
catgtgcaagaaaaccaacatgtgtgagaaatctggagtagacccaatgaagaagttaatgtgtgatggaacaagtagattttcttc |
24985448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 55 - 234
Target Start/End: Original strand, 24993181 - 24993360
Alignment:
| Q |
55 |
gtaggattgtggagagtgtaggggaaggagtgaatgacttgaaagaaaatgacaaggtggtgctaatattcaatggtgagtgtggtgagtgtaagtgttg |
154 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||| || ||||||| || ||||||||||||||||| | || |
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| T |
24993181 |
gtaggattgtggagagtgtaggggaaggagtgaaagacttaaacgaaaatgacaaagtggtgatagtattcaacggggagtgtggtgagtgtaactactg |
24993280 |
T |
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| Q |
155 |
catgtgcaagaaaaccaacatgtgtgagaaatctggagtagacccaatgaagaagttaatgtgtgatggaacaagtagat |
234 |
Q |
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| T |
24993281 |
caagtgtgagaaaaccaacatgtgtgagaagtatggtgtaaacccaatgaagagactaatgtgtgatggtacaagtagat |
24993360 |
T |
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