View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5684_low_39 (Length: 250)
Name: NF5684_low_39
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 21830647 - 21830868
Alignment:
| Q |
12 |
atgaatagaaccattaataatgctcaatctcatgcttaatatgtattgaagtaatatctcactttcttatttcttagtcatttgttccattctaggtaag |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21830647 |
atgaatagaaccattaataatgctcaatctcatgcttaatatgtattgaagtaatatctcactttcttatttcttagtcatttgttccattctaggtaag |
21830746 |
T |
|
| Q |
112 |
gttttgatactcatgtatgcgataacattcaatcgcttctaatttctcaaatttttatttgtatgtgtctatgttgtatctagtgtgtgtacaagttctt |
211 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21830747 |
gttttgatactcatgtatgctataacattcaatcgcttctaatttctcaaatttttatttgtatgtgtctatgttgtatctagtgtgtgtacaagttctt |
21830846 |
T |
|
| Q |
212 |
cattatacttttctttaatttc |
233 |
Q |
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|||||||||||||||||||||| |
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| T |
21830847 |
cattatacttttctttaatttc |
21830868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 11791853 - 11791928
Alignment:
| Q |
12 |
atgaatagaaccattaataatgctcaatctcatgcttaatatgtattgaagtaatatctcactttcttatttctta |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11791853 |
atgaatagaaccattaataatgctcaatctcatgcttaatatgtattgaagtaatatctcactttcttatttctta |
11791928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 45630674 - 45630749
Alignment:
| Q |
12 |
atgaatagaaccattaataatgctcaatctcatgcttaatatgtattgaagtaatatctcactttcttatttctta |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45630674 |
atgaatagaaccattaataatgctcaatctcatgcttaatatgtattgaagtaatatctcactttcttatttctta |
45630749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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