View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5684_low_45 (Length: 238)
Name: NF5684_low_45
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4110303 - 4110085
Alignment:
| Q |
1 |
tgagcccggcagtgttaggtctccactttacgcaaagaaattggagtttgaccaattatcaagtgaccacaagtataagaaatgtatcaagaagaagaat |
100 |
Q |
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| T |
4110303 |
tgagccaggcagtgttaggtctccactttacgcaaagaaattggagtttgaccaattatcaagtgaccacaaggataagaaatgtatcaagaagaagaat |
4110204 |
T |
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| Q |
101 |
gtagatgatactggtaacttgtgtagtagggtgctaacaagaagcattgccaagaaaagtcacatgatgcttataataaaggatgggaaagctgaagtaa |
200 |
Q |
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| T |
4110203 |
gtagatgatactggtaaattgtgtagtagggtgctaacaagaagcattgccaagaaaagtcacattatgctt---ataaaggatgggaaagctgaagtaa |
4110107 |
T |
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| Q |
201 |
aatgtttcacttctcctgttag |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
4110106 |
aatgtttcacttctcctgttag |
4110085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 14697381 - 14697174
Alignment:
| Q |
15 |
ttaggtctccactttacgcaaagaaattggagtttgaccaattatcaagtgaccacaagtataagaaatgtatcaagaagaagaatgtagatgatactgg |
114 |
Q |
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| T |
14697381 |
ttaggtctccactttacgcaaagaaattggattttgacatattatcaagtgaccgcatggataagaaacgtaccaagaagaagattgtaggggaaactgg |
14697282 |
T |
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| Q |
115 |
taacttgtgta---gtagggtgctaacaagaagcattgccaagaaaagtcacatgatgcttataataaaggatgggaaagctgaagtaaaatgtttcact |
211 |
Q |
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| T |
14697281 |
taacttgtgtagtagtagggtgctgacaagaagcattgccaagaaaagtcacatgatgctt---aaaaaggatgggaaaactgcagtaaaatgtttcact |
14697185 |
T |
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| Q |
212 |
tctcctgttag |
222 |
Q |
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||||||||||| |
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| T |
14697184 |
tctcctgttag |
14697174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 17651522 - 17651729
Alignment:
| Q |
15 |
ttaggtctccactttacgcaaagaaattggagtttgaccaattatcaagtgaccacaagtataagaaatgtatcaagaagaagaatgtagatgatactgg |
114 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||||||||||| || | |||||||| ||| ||||||||||| |||| | || ||||| |
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| T |
17651522 |
ttaggtctccactttacgcaaagaaattggattttgacatattatcaagtgaccgcatggataagaaacgtaccaagaagaagattgtaaaggaaactgg |
17651621 |
T |
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| Q |
115 |
taacttgt---gtagtagggtgctaacaagaagcattgccaagaaaagtcacatgatgcttataataaaggatgggaaagctgaagtaaaatgtttcact |
211 |
Q |
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||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||| ||| |||||||||||||||| |
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| T |
17651622 |
taaattgtgtagtagtagggtgctgacaagaagcattgccaagaaaagtcacatgatgctt---aaaaaggatgggaaaactgcagtaaaatgtttcact |
17651718 |
T |
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| Q |
212 |
tctcctgttag |
222 |
Q |
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||||||||||| |
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| T |
17651719 |
tctcctgttag |
17651729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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