View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5684_low_46 (Length: 232)
Name: NF5684_low_46
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_low_46 |
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| [»] chr5 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 4 - 232
Target Start/End: Complemental strand, 42268852 - 42268626
Alignment:
| Q |
4 |
cacgagcatcaccaccatgagcaccacaaaatacccagtatcaacaccataatgtaaaccagcacgaaacacaacaaacggnnnnnnnntttcccaaaaa |
103 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| || |||||||||| |
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| T |
42268852 |
cacgagcatcaccaccatgagcaccacaaaatacccaatatcaacaccacaatgtaaaccagcacgaaacacaacaaatggaaaaaaa--ttcccaaaaa |
42268755 |
T |
|
| Q |
104 |
caaaaccaactcacaagtttctaatcattaacaccaaaatatcaccaccacgcaaaaaagacaccatttacgtttcaactcccaccccaacaacaaaaac |
203 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42268754 |
caaacccaactcacaagtttctaatcattaacaccaaaatatcaccaccacgcaaaaaagacaccatttacgtttcaactcccaacccaacaacaaaaac |
42268655 |
T |
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| Q |
204 |
aatatgtaacaaccaccaataaccaccca |
232 |
Q |
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|||||||||| | |||||||||||||||| |
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| T |
42268654 |
aatatgtaaccaacaccaataaccaccca |
42268626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 40599857 - 40599723
Alignment:
| Q |
97 |
ccaaaaacaaaaccaactcacaagtttctaatcattaacaccaaaatatcaccaccacgcaaaaaagacaccatttacgtttcaactcccaccccaacaa |
196 |
Q |
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||||||| |||||||||||||||| |||| | ||| ||||||||||||||||||||| ||||||||||||||| |||| || ||||| ||| ||||| |
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| T |
40599857 |
ccaaaaataaaaccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcaaaaaagacacca-ttacattccaactaccaacccaagtg |
40599759 |
T |
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| Q |
197 |
caaaaacaatatgtaacaaccaccaataaccaccca |
232 |
Q |
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||||||| |||||||| | ||| |||||||||||| |
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| T |
40599758 |
caaaaaccttatgtaaccaacactaataaccaccca |
40599723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 24718106 - 24718331
Alignment:
| Q |
4 |
cacgagcatcaccaccatgagcaccacaaaatacccagtatcaacaccataatgtaaaccagcacgaaacacaacaaacggnnnnnnnntttcccaaaaa |
103 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||| ||| ||| |||| | |||||||| |
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| T |
24718106 |
cacgagcatcaccaccatgaacaccacaaaagacccagtatcaacaccaccatgtaaaccagcacgaagcaccacagacggaaaaaaaat--cccaaaaa |
24718203 |
T |
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| Q |
104 |
caaaaccaactcacaagtttctaatcattaacaccaaaatatcaccaccacgcaaaaaagacaccatttacgtttcaactcccaccccaacaacaaaaac |
203 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24718204 |
caaaaccaactcacaagcttctaatcattaataccaaaatatcaccaccacacaaaaaagacaccatttacgtttcaactcccaacccaacaacaaaaac |
24718303 |
T |
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| Q |
204 |
aatatgtaacaaccaccaataaccaccca |
232 |
Q |
| |
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|| ||||||| | |||||||||||||||| |
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| T |
24718304 |
aa-atgtaaccaacaccaataaccaccca |
24718331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 43032427 - 43032293
Alignment:
| Q |
97 |
ccaaaaacaaaaccaactcacaagtttctaatcattaacaccaaaatatcaccaccacgcaaaaaagacaccatttacgtttcaactcccaccccaacaa |
196 |
Q |
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||||||||||||||||| |||||| |||| ||||| |||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||||| |
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| T |
43032427 |
ccaaaaacaaaaccaacacacaagcttctcatcatcaacaccaaaatatcaccaccacgcaaaaaatacaccatttacattctaactcccaacccaacag |
43032328 |
T |
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| Q |
197 |
caaaaacaatatgtaacaaccaccaataaccaccca |
232 |
Q |
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| ||||| |||||||| | |||||||||||||||| |
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| T |
43032327 |
c-aaaaccttatgtaaccaacaccaataaccaccca |
43032293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 97 - 203
Target Start/End: Original strand, 31699405 - 31699511
Alignment:
| Q |
97 |
ccaaaaacaaaaccaactcacaagtttctaatcattaacaccaaaatatcaccaccacgcaaaaaagacaccatttacgtttcaactcccaccccaacaa |
196 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| |
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| T |
31699405 |
ccaaaaacaaaaccaactcacaagcttctaatcatcaacaccaaaatatcaccaccatacaaaaaagacaccatttacgttccaactcccaacccaacaa |
31699504 |
T |
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| Q |
197 |
caaaaac |
203 |
Q |
| |
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||||||| |
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| T |
31699505 |
caaaaac |
31699511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 9910724 - 9910961
Alignment:
| Q |
4 |
cacgagcatcaccaccatgagcaccac---aaaatacccagtatcaacaccataatgtaaaccagcacgaaacacaacaaacggnnnnnnnnt------t |
94 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| |||||| |||||| ||| |||||||| | |
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| T |
9910724 |
cacgagcatcaccaccatgagcaccactacaaaagacccagtatcaacaccatcatggaaaccaccacgaagcaccacaaacggaaaaacaaaaaaaaat |
9910823 |
T |
|
| Q |
95 |
tcccaaaaacaaaaccaactcacaagtttctaatcattaacaccaaaatatcaccaccacgcaaaaaagacaccatttacgtttcaactcccaccccaac |
194 |
Q |
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|| |||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||| ||| |||||||| |||||| |
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| T |
9910824 |
cccaaaaaacaaaaccaacttacaagcttctaatcatcaacaccaaaatatcaccaccacgcaaaaaatacaccatttaagttcaaactcccaacccaac |
9910923 |
T |
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| Q |
195 |
aacaaaaacaatatgtaacaaccaccaataaccaccca |
232 |
Q |
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| |||||| |||||||| | |||| ||||||||||| |
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| T |
9910924 |
aggaaaaaccttatgtaaccaacacctataaccaccca |
9910961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 96 - 193
Target Start/End: Original strand, 23636038 - 23636135
Alignment:
| Q |
96 |
cccaaaaacaaaaccaactcacaagtttctaatcattaacaccaaaatatcaccaccacgcaaaaaagacaccatttacgtttcaactcccaccccaa |
193 |
Q |
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||||||||||||||||||||||| | || ||||||| ||||| |||||||||||||||||||||||||||| |||||||||| ||||||||| ||||| |
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| T |
23636038 |
cccaaaaacaaaaccaactcacatgcttataatcatcaacactaaaatatcaccaccacgcaaaaaagacatcatttacgttccaactcccaacccaa |
23636135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 2077315 - 2077240
Alignment:
| Q |
156 |
caaaaaagacaccatttacgtttcaactcccaccccaacaacaaaaacaatatgtaacaaccaccaataaccaccca |
232 |
Q |
| |
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||||||||||||||||||| || ||| ||||| ||||||| ||||||| |||||||| | |||||||||||||||| |
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| T |
2077315 |
caaaaaagacaccatttacattccaaatcccaacccaacatcaaaaac-ctatgtaaccatcaccaataaccaccca |
2077240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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