View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5684_low_47 (Length: 228)
Name: NF5684_low_47
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_low_47 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 3700033 - 3700254
Alignment:
| Q |
7 |
ataaaaaggaaaaggaaaacgaatatgttgagctttaaactaaattctaataatctataattcgaaagaaaaggatacaataaatcacaagaatagtata |
106 |
Q |
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| T |
3700033 |
ataaaaaggaaaaggaaaaggaatatgttgagctttaaactaaattctaataatctataattcgaaagaaaaggatacaataaatcacaagaatagtata |
3700132 |
T |
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| Q |
107 |
aactttcgatttacatgaggtaattatttacatgaaatataaagagtgaacaaaagaatttgtagatttttgaagagcacatataatatggatgggatga |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3700133 |
aactttcgatttacatgaggtaattatttacatgaaatataaagagtgaacaaaagaatttgtagattttttaagagcacatataatatggatgggatga |
3700232 |
T |
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| Q |
207 |
ttaagatcgtttccaacttaat |
228 |
Q |
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|||||||| | | ||||||||| |
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| T |
3700233 |
ttaagatcttcttcaacttaat |
3700254 |
T |
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