View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5684_low_5 (Length: 540)
Name: NF5684_low_5
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_low_5 |
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| [»] scaffold0343 (1 HSPs) |
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Alignment Details
Target: scaffold0343 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: scaffold0343
Description:
Target: scaffold0343; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 19 - 526
Target Start/End: Original strand, 5179 - 5684
Alignment:
| Q |
19 |
tttgaaggacaaagttccagaagaggtgtgcttccaaattaattcatctgacttttgctctaatgggattgtttcttgcaacacaatttgtgtcagatta |
118 |
Q |
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| T |
5179 |
tttgaaggacaaagttccagaagaggtgtgcttccaaattaattcatctgactttttctcttttgggattgtttcttgcagcacaatttgtgtcagatta |
5278 |
T |
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| Q |
119 |
ggaaaagcttgagccatttcattaggaaaatatataggagttaccatcaaatatgaattcatttactttggcttgtacattcacccaccctctagcttat |
218 |
Q |
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| T |
5279 |
ggaaaagcttgagccatttcattaggaaaata----ggactcaccatcaaataggaattcatttactttggcttgtaaattcacccacgctctagcttat |
5374 |
T |
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| Q |
219 |
cgttgttctcatcatat--tgaccaacattatttacctcttggctgaacttcgcattaccaatgcccatttctcctgagaatcggcggatcaagatcaga |
316 |
Q |
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| T |
5375 |
cgttgttctcatcatataatgtccaacattatttacctcctggctgaacttcgcattaccaatgcccatttctcccgagaatcggaggattaagactaga |
5474 |
T |
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| Q |
317 |
aaaagaataatgtaattgtataaaatcaaaagtgcgaaggaagtcctccccttacgtaaggaaattagttgtttgtgtatttaatgtatcagttttccgt |
416 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| || |
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| T |
5475 |
aaaagaataatgtaattgtctaaaatcaaaggtgcgaaggaagtcctccccttacgtaaggaaattagttgttagtgtatttaatgtatgtgttttctgt |
5574 |
T |
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| Q |
417 |
gttcatgtgaaaagtgtaaaatgtagcattaagtgcctatttgaaatgaaataaattttaccacttcatttcgagtcactaggtatttgtaaacctttat |
516 |
Q |
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| T |
5575 |
gttcatgtgaaaagtgtaaaatgtagcattaagtgcctatttgaaatgaaataaattttaccacttcatttcgagtcactaggtatttgtaaacctttat |
5674 |
T |
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| Q |
517 |
attttatcat |
526 |
Q |
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| T |
5675 |
attttctcat |
5684 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 78
Target Start/End: Original strand, 26973954 - 26974002
Alignment:
| Q |
30 |
aagttccagaagaggtgtgcttccaaattaattcatctgacttttgctc |
78 |
Q |
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| T |
26973954 |
aagttccagaggatgtgtgcttccaaattatttcatatgagttttgctc |
26974002 |
T |
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