View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5684_low_7 (Length: 527)
Name: NF5684_low_7
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 24 - 514
Target Start/End: Original strand, 41038858 - 41039343
Alignment:
| Q |
24 |
atgcatgacgtgattaaagaaaatcattcacatgatctaacataataacttaatttttattgtttttcatcgaggttaatagtttttattaaatctttac |
123 |
Q |
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| T |
41038858 |
atgcatgacgtgattaaagaaaatcattcacgtgatctaacataataacttaatttttattgtttttcatcgaggttaatagtttttattaaatctttac |
41038957 |
T |
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| Q |
124 |
catatgtagaggtatgctttgttataatcgaaaattattatctgtaaccnnnnnnngtaatcgaaagttattatcacaaaaaatatatagcatttttgac |
223 |
Q |
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| T |
41038958 |
cat--gtagaggtatgctttgttataatcgaaagttattatctgtaaccaaaaaaagtaatcgaaagttattatcacaaaaaatatatagcagttttgac |
41039055 |
T |
|
| Q |
224 |
atctttatccataatcattatcataatcataacctctaggcaggtgaatgagtgtatgccataacatacatacaagatttataaaccccatttacatgac |
323 |
Q |
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| T |
41039056 |
atctttatccataatcattatcataatcataacctctaggcaggtgaatgagtgtatgccataacatact----agatttataaaccccatttacatgac |
41039151 |
T |
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| Q |
324 |
attagcttatattttgtgcaataacaatgcacgtttttattggatatttagctattcatcatttgttcataaataaacaa-gacaattgaatcataaata |
422 |
Q |
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| T |
41039152 |
attagcttatattttgtgcaataacaatgcacgtttttattggatatttagctattcatcatttgttcataaataaacaaagacaattgaatcataaata |
41039251 |
T |
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| Q |
423 |
tctaaccaaagacaagaaaagtaaactacaataaaatagatggtacgttggcaagccatccatcattatttatgaaagatgacaaagtatat |
514 |
Q |
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| T |
41039252 |
tctaaccaaagacaagaaaagtaaactacaataaaatagatggtacgttggcaagccatccatcattatttatgaaagatgacaaagtatat |
41039343 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 514
Target Start/End: Complemental strand, 18745566 - 18745525
Alignment:
| Q |
473 |
gcaagccatccatcattatttatgaaagatgacaaagtatat |
514 |
Q |
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| T |
18745566 |
gcaagccatccatctttatttatgaaagatgataaagaatat |
18745525 |
T |
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