View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5684_low_8 (Length: 481)
Name: NF5684_low_8
Description: NF5684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5684_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 20 - 367
Target Start/End: Complemental strand, 31456608 - 31456261
Alignment:
| Q |
20 |
gtatgaagaaatcatcaacttttcactttaccattggtaaattgtcatgacattggatgatgtctcatgtcttatgtacttgcctatccatagtaagctg |
119 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31456608 |
gtatgaagagatcatcaacttttcactttaccattggtaaattgtcatgacattggatgatgtgtcatgtcttatgtacttgcctatccatagtaagctg |
31456509 |
T |
|
| Q |
120 |
gtgaaccatcgagctcgaatgtccaaagaagagggtgctgctttccttaatgaattgcttgatatggacattgaagttgcttacgacgaatgtgatagat |
219 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31456508 |
gtgcaccatcgagctcgaatgtccaaagaagagggtgctgctttccttaatgaattgcttgatatggacattgaagttgcttacgacgaatgtgatagat |
31456409 |
T |
|
| Q |
220 |
tgaagtgtgctcactttacatttagttggatgcttgaagttttcagtgatcattacactaaagccttacatttggatagtgcatcagggagggaggttga |
319 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31456408 |
tgaagtgtgctcacttcacatttagttggatgcttgaagttttcagtgatcattacactaaagccttacatttggatagtgcatcagggagggaggttga |
31456309 |
T |
|
| Q |
320 |
gagagatgggaatatggtcatgtgcatacgagtttacttactttacct |
367 |
Q |
| |
|
|||||||||||||||| | ||| ||||||||||||||||||||||||| |
|
|
| T |
31456308 |
gagagatgggaatatgattatgcgcatacgagtttacttactttacct |
31456261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 393 - 471
Target Start/End: Complemental strand, 31456270 - 31456192
Alignment:
| Q |
393 |
tactttaccttgttggaggcaccatttttacagacaaaaacaatcagtatgttgatgcagtgtttctaaagtacctatg |
471 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31456270 |
tactttacctcgttggaggcaccatttttacagacaaaaacaatcagtatgttgatgcagtgtttctaaagtatctatg |
31456192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University