View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5685-Insertion-2 (Length: 920)

Name: NF5685-Insertion-2
Description: NF5685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5685-Insertion-2
NF5685-Insertion-2
[»] chr5 (19 HSPs)
chr5 (8-459)||(34086214-34086664)
chr5 (774-920)||(5348015-5348161)
chr5 (774-916)||(36429581-36429723)
chr5 (826-898)||(26380043-26380115)
chr5 (680-728)||(5348372-5348419)
chr5 (557-601)||(5348501-5348545)
chr5 (680-728)||(7491466-7491514)
chr5 (680-728)||(36429938-36429986)
chr5 (680-754)||(36429501-36429569)
chr5 (560-602)||(36429381-36429423)
chr5 (557-602)||(7491347-7491392)
chr5 (680-732)||(14278109-14278162)
chr5 (557-602)||(29500105-29500150)
chr5 (557-602)||(36430060-36430105)
chr5 (557-602)||(36681845-36681890)
chr5 (689-725)||(29500236-29500272)
chr5 (557-601)||(31808373-31808417)
chr5 (685-728)||(29500584-29500627)
chr5 (685-728)||(31808502-31808545)
[»] chr7 (8 HSPs)
chr7 (45-449)||(13818474-13818875)
chr7 (774-910)||(36067614-36067750)
chr7 (680-728)||(36067974-36068022)
chr7 (557-602)||(30480689-30480735)
chr7 (691-751)||(36067524-36067581)
chr7 (691-732)||(3987103-3987144)
chr7 (557-602)||(36068102-36068146)
chr7 (691-724)||(30480579-30480612)
[»] chr6 (12 HSPs)
chr6 (680-920)||(17732496-17732732)
chr6 (774-920)||(15347724-15347870)
chr6 (680-920)||(6009109-6009344)
chr6 (774-916)||(30709792-30709934)
chr6 (680-728)||(17732234-17732282)
chr6 (557-602)||(6009422-6009467)
chr6 (557-601)||(17732111-17732155)
chr6 (680-728)||(30710152-30710199)
chr6 (680-754)||(30709708-30709776)
chr6 (557-602)||(17732810-17732855)
chr6 (691-728)||(18749024-18749061)
chr6 (557-602)||(30710273-30710318)
[»] chr3 (18 HSPs)
chr3 (680-920)||(50837939-50838174)
chr3 (774-920)||(54560325-54560471)
chr3 (774-916)||(47470993-47471134)
chr3 (682-754)||(47470915-47470981)
chr3 (557-601)||(1576582-1576626)
chr3 (680-728)||(54560682-54560730)
chr3 (557-602)||(50838253-50838298)
chr3 (557-601)||(1577506-1577550)
chr3 (680-728)||(35942660-35942708)
chr3 (557-601)||(50837555-50837599)
chr3 (680-728)||(50837677-50837724)
chr3 (557-601)||(54560812-54560856)
chr3 (680-715)||(43546585-43546620)
chr3 (560-602)||(43546465-43546507)
chr3 (560-602)||(47470793-47470835)
chr3 (683-728)||(35942324-35942369)
chr3 (557-602)||(47471470-47471515)
chr3 (680-725)||(47471352-47471396)
[»] chr1 (10 HSPs)
chr1 (680-916)||(47445466-47445691)
chr1 (686-731)||(36475505-36475550)
chr1 (680-728)||(36475842-36475890)
chr1 (680-728)||(47445200-47445248)
chr1 (685-728)||(27585864-27585907)
chr1 (686-728)||(27585523-27585565)
chr1 (557-601)||(36475966-36476010)
chr1 (557-600)||(36475369-36475411)
chr1 (557-599)||(47445084-47445126)
chr1 (557-602)||(47445769-47445814)
[»] chr2 (9 HSPs)
chr2 (774-909)||(4592917-4593052)
chr2 (790-916)||(10256012-10256138)
chr2 (680-829)||(10255888-10256027)
chr2 (680-728)||(4593268-4593316)
chr2 (680-728)||(10256356-10256404)
chr2 (560-601)||(4593399-4593440)
chr2 (557-601)||(10256485-10256529)
chr2 (560-602)||(10255768-10255810)
chr2 (692-728)||(33003114-33003150)
[»] chr8 (8 HSPs)
chr8 (774-920)||(14790969-14791115)
chr8 (774-916)||(20111970-20112113)
chr8 (682-754)||(20112123-20112189)
chr8 (680-728)||(14791326-14791374)
chr8 (557-601)||(14791449-14791493)
chr8 (774-818)||(18308867-18308911)
chr8 (557-602)||(20112271-20112315)
chr8 (558-599)||(20111588-20111629)
[»] scaffold0102 (4 HSPs)
scaffold0102 (680-916)||(32571-32793)
scaffold0102 (557-602)||(33138-33183)
scaffold0102 (685-728)||(33011-33054)
scaffold0102 (557-602)||(32448-32493)
[»] chr4 (15 HSPs)
chr4 (774-916)||(27455219-27455361)
chr4 (814-916)||(49681748-49681850)
chr4 (680-754)||(49681878-49681949)
chr4 (686-754)||(27455143-27455205)
chr4 (557-601)||(620566-620610)
chr4 (557-601)||(621531-621575)
chr4 (681-725)||(21225014-21225058)
chr4 (680-728)||(49681476-49681524)
chr4 (690-728)||(21224479-21224517)
chr4 (560-602)||(27455015-27455057)
chr4 (558-599)||(21226521-21226561)
chr4 (687-728)||(27455579-27455620)
chr4 (557-602)||(27455708-27455753)
chr4 (685-725)||(21226405-21226445)
chr4 (557-596)||(11147841-11147880)


Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 8 - 459
Target Start/End: Original strand, 34086214 - 34086664
Alignment:
Q  8 aatttgtcattggaaaaatccttaaattgtttgttgtctgagaaaattgatgcataatggccctggccttggcaacaggaccgtttgttcatagctgtgc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34086214 aatttgtcattggaaaaatccttaaattgtttgttgtctgagaaaattgatgcataatggccctggccttggcaacaggaccgtttgttcatagctgtgc 34086313  T
Q  108 attatctcccatgactttcttcatcaaaaagatattgttctatgctatctctcgcctctatatttttcttctttccattcattttgaaatctcgataact 207  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34086314 attatctcccatgactt-cttcatcaaaaagatattgttctatgctatctctcgcctctatatttttcttctttccattcattttgaaatctcgataact 34086412  T
Q  208 agaaaagataaattgtctctgtttatattcaattataggatctataagaatcatttttctttgaatcttggggaagtttaaaattaatatttgtcccact 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34086413 agaaaagataaattgtctctgtttatattcaattataggatctataagaatcatttttctttgaatcttggggaagtttaaaattaatatttgtcccact 34086512  T
Q  308 gatggttttatcaacattcttgatttatatgcattctgactttgtatcttatctccaattgtagacgaccgaatgcagtgttcatgaagattaacaggat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34086513 gatggttttatcaacattcttgatttatatgcattctgactttgtatcttatctccaattgtagacgaccgaatgcagtgttcatgaagattaacaggat 34086612  T
Q  408 gttggttttggatcagcctcatgatgagataggatagaccacatataattcg 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34086613 gttggttttggatcagcctcatgatgagataggatagaccacatataattcg 34086664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 774 - 920
Target Start/End: Original strand, 5348015 - 5348161
Alignment:
Q  774 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaaca 873  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  5348015 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaaca 5348114  T
Q  874 agggttatgatgaatagcatgaacaccaacatcaacagcaacgtttc 920  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  5348115 agggttatgatgaatagcatgaacaccaacatcaacatcaacgtttc 5348161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 774 - 916
Target Start/End: Original strand, 36429581 - 36429723
Alignment:
Q  774 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaaca 873  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||| ||||||    
T  36429581 tgtttgttaccttcttgaattaatcaacaacaaccttttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgtttgaaaaagaaca 36429680  T
Q  874 agggttatgatgaatagcatgaacaccaacatcaacagcaacg 916  Q
    ||| ||||||||||||||||| ||| |||||||||||||||||    
T  36429681 aggtttatgatgaatagcatggacaacaacatcaacagcaacg 36429723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 826 - 898
Target Start/End: Original strand, 26380043 - 26380115
Alignment:
Q  826 aacagaatgaataacagaaaagatcatgaacttgttggaaagagaacaagggttatgatgaatagcatgaaca 898  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| ||||    
T  26380043 aacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaaca 26380115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 680 - 728
Target Start/End: Complemental strand, 5348419 - 5348372
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  5348419 tccagaaaaaatt-aagaaacaacaaccattaacaacatcatcatcatc 5348372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 557 - 601
Target Start/End: Complemental strand, 5348545 - 5348501
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgact 601  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||    
T  5348545 gttagtcaattacccccctccgtttgttttggctgttaaatgact 5348501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 680 - 728
Target Start/End: Original strand, 7491466 - 7491514
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||||||||    
T  7491466 tccagaaaaaaattaagaaacaataaccattaacaacatcatcatcatc 7491514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 680 - 728
Target Start/End: Complemental strand, 36429986 - 36429938
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    ||||||||||| |||||||||| ||||||||||||||| ||||||||||    
T  36429986 tccagaaaaaaattaagaaacagcaaccattaacaacatcatcatcatc 36429938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 680 - 754
Target Start/End: Original strand, 36429501 - 36429569
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttttaatgat 754  Q
    |||||||||| |||||||||||||||||||||||||      ||||||||| ||| ||||||||||| |||||||    
T  36429501 tccagaaaaattttaagaaacaacaaccattaacaa------catcatcattaacatcacacactttataatgat 36429569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 560 - 602
Target Start/End: Original strand, 36429381 - 36429423
Alignment:
Q  560 agtcaattatccccctccgtttgttttggctattaaatgacta 602  Q
    ||||||||| ||||||||||||||||||||| |||||||||||    
T  36429381 agtcaattacccccctccgtttgttttggctgttaaatgacta 36429423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 557 - 602
Target Start/End: Original strand, 7491347 - 7491392
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgacta 602  Q
    |||||||||||| |||||| |||||||||||||| |||||||||||    
T  7491347 gttagtcaattaccccccttcgtttgttttggctgttaaatgacta 7491392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 680 - 732
Target Start/End: Original strand, 14278109 - 14278162
Alignment:
Q  680 tccagaaaa-aatttaagaaacaacaaccattaacaacaacatcatcatcatca 732  Q
    ||||||||| ||| |||||||||||||| || ||||||||||||||||||||||    
T  14278109 tccagaaaataatgtaagaaacaacaacaatcaacaacaacatcatcatcatca 14278162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 557 - 602
Target Start/End: Original strand, 29500105 - 29500150
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgacta 602  Q
    |||||||||||| ||| ||||||||||||||||| |||||||||||    
T  29500105 gttagtcaattacccctctccgtttgttttggctcttaaatgacta 29500150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 557 - 602
Target Start/End: Complemental strand, 36430105 - 36430060
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgacta 602  Q
    |||||||||||| |||| |||||||||||||||| |||||||||||    
T  36430105 gttagtcaattacccccatccgtttgttttggctgttaaatgacta 36430060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 557 - 602
Target Start/End: Complemental strand, 36681890 - 36681845
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgacta 602  Q
    |||||||||||| |||||||||||||||||| || |||||||||||    
T  36681890 gttagtcaattacccccctccgtttgttttgactgttaaatgacta 36681845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 689 - 725
Target Start/End: Original strand, 29500236 - 29500272
Alignment:
Q  689 aatttaagaaacaacaaccattaacaacaacatcatc 725  Q
    ||||||||||||||||||||||||||||| |||||||    
T  29500236 aatttaagaaacaacaaccattaacaacatcatcatc 29500272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 557 - 601
Target Start/End: Original strand, 31808373 - 31808417
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgact 601  Q
    |||||||||||| ||||||| ||||||||||||| ||||||||||    
T  31808373 gttagtcaattacccccctcagtttgttttggctgttaaatgact 31808417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 728
Target Start/End: Complemental strand, 29500627 - 29500584
Alignment:
Q  685 aaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    |||| |||||||||| ||||||||||||||||| ||||||||||    
T  29500627 aaaatatttaagaaataacaaccattaacaacatcatcatcatc 29500584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 728
Target Start/End: Original strand, 31808502 - 31808545
Alignment:
Q  685 aaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||    
T  31808502 aaaaaaattaagatacaacaaccattaacaacatcatcatcatc 31808545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 270; Significance: 1e-150; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 45 - 449
Target Start/End: Complemental strand, 13818875 - 13818474
Alignment:
Q  45 ctgagaaaattgatgcataatggccctggccttggcaacaggaccgtttgttcatagctgtgcattatctcccatgactttcttcatcaaaaagatattg 144  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||| | ||||||||||||  || ||| ||||||||||||| |||||    
T  13818875 ctgagaaaattgatgcataatggcactggccttggcaacaagaccgtttattcatagttatgcattatctccagtggctt-cttcatcaaaaaggtattg 13818777  T
Q  145 ttctatgctatctctcgcctctatatttttcttctttccattcattttgaaatctcgataactagaaaagataaattgtctctgtttatattcaattata 244  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | || ||||||||||||||||||  |||| |||||| |||||    
T  13818776 ttctatgctatctctcgcctatatatttttcttctttccattcattttgaaatatcggtgacaagaaaagataaattgtct--gtttgtattcagttata 13818679  T
Q  245 ggatctataagaatcatttttctttgaatcttggggaagtttaaaattaatatttgtcccactgatggttttatcaacattcttgatttatatgcattct 344  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |  ||||||||||||||||||||||||    
T  13818678 ggatccataagaataatttttctttgaatcttggggaagtttaaaattaatatttgtccctgtgatggtttttttgacattcttgatttatatgcattct 13818579  T
Q  345 gactttgtatcttatctccaattgtagacgaccgaatgcagtgttcatgaagattaacaggatgttggttttggatcagcctcatgatgagataggatag 444  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| |||||| |||||||||| ||||||||||    
T  13818578 gactttgtatcttatctccaattgtagacgaccgaatgcagtgttcatgaagattaacatagtgttggtttcggatcaacctcatgatgggataggatag 13818479  T
Q  445 accac 449  Q
    |||||    
T  13818478 accac 13818474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 774 - 910
Target Start/End: Original strand, 36067614 - 36067750
Alignment:
Q  774 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaaca 873  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36067614 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaaca 36067713  T
Q  874 agggttatgatgaatagcatgaacaccaacatcaaca 910  Q
    ||| ||||||||||||||||||||| |||||||||||    
T  36067714 aggtttatgatgaatagcatgaacaacaacatcaaca 36067750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 680 - 728
Target Start/End: Complemental strand, 36068022 - 36067974
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  36068022 tccagaaaaaaattaagaaacaacaaccattaacaacatcatcatcatc 36067974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 602
Target Start/End: Complemental strand, 30480735 - 30480689
Alignment:
Q  557 gttagtcaattatccccctccgttt-gttttggctattaaatgacta 602  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||    
T  30480735 gttagtcaattatccccctccgtttggttttggctgttaaatgacta 30480689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 691 - 751
Target Start/End: Original strand, 36067524 - 36067581
Alignment:
Q  691 tttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttttaat 751  Q
    ||||||||||||||||||||||||||||||||||| ||| ||   ||||||||||| ||||    
T  36067524 tttaagaaacaacaaccattaacaacaacatcatcttcaaca---tcacacactttctaat 36067581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 691 - 732
Target Start/End: Complemental strand, 3987144 - 3987103
Alignment:
Q  691 tttaagaaacaacaaccattaacaacaacatcatcatcatca 732  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  3987144 tttaagaaacaacaaccattaacaatatcatcatcatcatca 3987103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 557 - 602
Target Start/End: Complemental strand, 36068146 - 36068102
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgacta 602  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||    
T  36068146 gttagtcaattacccccctccgtttgttttggct-ttaaatgacta 36068102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 691 - 724
Target Start/End: Complemental strand, 30480612 - 30480579
Alignment:
Q  691 tttaagaaacaacaaccattaacaacaacatcat 724  Q
    ||||||||||||||||||||||||||| ||||||    
T  30480612 tttaagaaacaacaaccattaacaacatcatcat 30480579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 171; Significance: 2e-91; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 680 - 920
Target Start/End: Complemental strand, 17732732 - 17732496
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttttaatgatnnnnnnnnnnnnnnnnnnntgtttg 779  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||                   ||||||    
T  17732732 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttctaatgattctctctctctctct----tgtttg 17732637  T
Q  780 ttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaacaagggtt 879  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17732636 ttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaagggtt 17732537  T
Q  880 atgatgaatagcatgaacaccaacatcaacagcaacgtttc 920  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17732536 atgatgaatagcatgaacaccaacatcaacagcaacgtttc 17732496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 774 - 920
Target Start/End: Original strand, 15347724 - 15347870
Alignment:
Q  774 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaaca 873  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  15347724 tgtttgttaccttcttaaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaaca 15347823  T
Q  874 agggttatgatgaatagcatgaacaccaacatcaacagcaacgtttc 920  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  15347824 agggttatgatgaatagcatgaacaccaacatcaacatcaacgtttc 15347870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 680 - 920
Target Start/End: Complemental strand, 6009344 - 6009109
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttttaatgatnnnnnnnnnnnnnnnnnnntgtttg 779  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||   ||||||||||| |||||||                   ||||||    
T  6009344 tccagaaaaattttaagaaacaacaaccattaacaacaacatcatcatcaaca---tcacacactttctaatgattctctctctctctctct--tgtttg 6009250  T
Q  780 ttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaacaagggtt 879  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||| ||||||||||||    
T  6009249 ttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacaaaatgaataacagaaaagatcgtggacttgttggaaaaagaacaagggtt 6009150  T
Q  880 atgatgaatagcatgaacaccaacatcaacagcaacgtttc 920  Q
    ||||||||||||||||||||||||||||||| ||| |||||    
T  6009149 atgatgaatagcatgaacaccaacatcaacatcaatgtttc 6009109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 774 - 916
Target Start/End: Original strand, 30709792 - 30709934
Alignment:
Q  774 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaaca 873  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||| ||||||    
T  30709792 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgtttgaaaaagaaca 30709891  T
Q  874 agggttatgatgaatagcatgaacaccaacatcaacagcaacg 916  Q
    ||| ||||||||||||||||||||| |||||||||||||||||    
T  30709892 aggtttatgatgaatagcatgaacaacaacatcaacagcaacg 30709934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 680 - 728
Target Start/End: Original strand, 17732234 - 17732282
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  17732234 tccagaaaaaaattaagaaacaacaaccattaacaacatcatcatcatc 17732282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 557 - 602
Target Start/End: Complemental strand, 6009467 - 6009422
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgacta 602  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||    
T  6009467 gttagtcaattatccctctccgtttgttttggctgttaaatgacta 6009422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 557 - 601
Target Start/End: Original strand, 17732111 - 17732155
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgact 601  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||    
T  17732111 gttagtcaattacccccctccgtttgttttggctgttaaatgact 17732155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 680 - 728
Target Start/End: Complemental strand, 30710199 - 30710152
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  30710199 tccagaaaaaatt-aagaaacaacaaccattaacaacatcatcatcatc 30710152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 680 - 754
Target Start/End: Original strand, 30709708 - 30709776
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttttaatgat 754  Q
    |||||||||||||||| ||||||||| |||||||||      ||||||||||||| ||||||||||| |||||||    
T  30709708 tccagaaaaaatttaaaaaacaacaatcattaacaa------catcatcatcaacatcacacactttataatgat 30709776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 557 - 602
Target Start/End: Complemental strand, 17732855 - 17732810
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgacta 602  Q
    ||||| |||||| ||||||||||||||||||||| |||||||||||    
T  17732855 gttagccaattacccccctccgtttgttttggctgttaaatgacta 17732810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 691 - 728
Target Start/End: Original strand, 18749024 - 18749061
Alignment:
Q  691 tttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  18749024 tttaagaaacaacaatcatcaacaacaacatcatcatc 18749061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 602
Target Start/End: Complemental strand, 30710318 - 30710273
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgacta 602  Q
    |||||||||||| |||| || ||||||||||||| |||||||||||    
T  30710318 gttagtcaattacccccatctgtttgttttggctgttaaatgacta 30710273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 4e-87; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 680 - 920
Target Start/End: Complemental strand, 50838174 - 50837939
Alignment:
Q  680 tccagaaaaaatttaa-gaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttttaatgatnnnnnnnnnnnnnnnnnnntgttt 778  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||                   |||||    
T  50838174 tccagaaaaaatttaaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttctaatgattctctctctctct------tgttt 50838081  T
Q  779 gttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaacaagggt 878  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  50838080 gttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaagggt 50837981  T
Q  879 tatgatgaatagcatgaacaccaacatcaacagcaacgtttc 920  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  50837980 tatgatgaatagcatgaacaccaacatcaacagcaacgtttc 50837939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 774 - 920
Target Start/End: Original strand, 54560325 - 54560471
Alignment:
Q  774 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaaca 873  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  54560325 tgtttgttaccttcttgaattaatcaactacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaaca 54560424  T
Q  874 agggttatgatgaatagcatgaacaccaacatcaacagcaacgtttc 920  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  54560425 agggttatgatgaatagcatgaacaccaacatcaacatcaacgtttc 54560471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 774 - 916
Target Start/End: Original strand, 47470993 - 47471134
Alignment:
Q  774 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaaca 873  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||    
T  47470993 tgtttgttaccttcttgaattaatcaacaacaaccctttggaat-catcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaaca 47471091  T
Q  874 agggttatgatgaatagcatgaacaccaacatcaacagcaacg 916  Q
    ||| |||| |||||||||||||||| ||||||||||| |||||    
T  47471092 aggtttataatgaatagcatgaacaacaacatcaacatcaacg 47471134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 682 - 754
Target Start/End: Original strand, 47470915 - 47470981
Alignment:
Q  682 cagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttttaatgat 754  Q
    ||||||||||||||||||||||||||||||||||      ||||||||||||| ||||||||||| |||||||    
T  47470915 cagaaaaaatttaagaaacaacaaccattaacaa------catcatcatcaacatcacacactttataatgat 47470981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 557 - 601
Target Start/End: Original strand, 1576582 - 1576626
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgact 601  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  1576582 gttagtcaattacccccctccgtttgttttggctattaaatgact 1576626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 680 - 728
Target Start/End: Complemental strand, 54560730 - 54560682
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  54560730 tccagaaaaaaattaagaaacaacaaccattaacaacatcatcatcatc 54560682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 557 - 602
Target Start/End: Complemental strand, 50838298 - 50838253
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgacta 602  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||    
T  50838298 gttagtcaattacccccctccgtttgttttggctgttaaatgacta 50838253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 557 - 601
Target Start/End: Complemental strand, 1577550 - 1577506
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgact 601  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||    
T  1577550 gttagtcaattacccccctccgtttgttttggctgttaaatgact 1577506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 680 - 728
Target Start/End: Complemental strand, 35942708 - 35942660
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    ||||||||||| |||||||||||||||||||||||||| || |||||||    
T  35942708 tccagaaaaaaattaagaaacaacaaccattaacaacatcaccatcatc 35942660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 557 - 601
Target Start/End: Original strand, 50837555 - 50837599
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgact 601  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||    
T  50837555 gttagtcaattacccccctccgtttgttttggctgttaaatgact 50837599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 680 - 728
Target Start/End: Original strand, 50837677 - 50837724
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  50837677 tccagaaaaaatt-aagaaacaacaaccattaacaacatcatcatcatc 50837724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 557 - 601
Target Start/End: Complemental strand, 54560856 - 54560812
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgact 601  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||    
T  54560856 gttagtcaattacccccctccgtttgttttggctgttaaatgact 54560812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 680 - 715
Target Start/End: Original strand, 43546585 - 43546620
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaa 715  Q
    ||||||||||||||||||||||||||||||||||||    
T  43546585 tccagaaaaaatttaagaaacaacaaccattaacaa 43546620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 560 - 602
Target Start/End: Original strand, 43546465 - 43546507
Alignment:
Q  560 agtcaattatccccctccgtttgttttggctattaaatgacta 602  Q
    ||||||||| ||||||||||||||||||||| |||||||||||    
T  43546465 agtcaattacccccctccgtttgttttggctgttaaatgacta 43546507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 560 - 602
Target Start/End: Original strand, 47470793 - 47470835
Alignment:
Q  560 agtcaattatccccctccgtttgttttggctattaaatgacta 602  Q
    ||||||||| ||||||||||||||||||||| |||||||||||    
T  47470793 agtcaattacccccctccgtttgttttggctgttaaatgacta 47470835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 728
Target Start/End: Original strand, 35942324 - 35942369
Alignment:
Q  683 agaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    |||||||||||||||| ||||||| |||||||||| ||||||||||    
T  35942324 agaaaaaatttaagaagcaacaactattaacaacatcatcatcatc 35942369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 557 - 602
Target Start/End: Complemental strand, 47471515 - 47471470
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgacta 602  Q
    |||||||||||| ||||||| ||||||||||||| |||||||||||    
T  47471515 gttagtcaattacccccctctgtttgttttggctgttaaatgacta 47471470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 725
Target Start/End: Complemental strand, 47471396 - 47471352
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatc 725  Q
    ||||||||||||| ||||||||||||||||||||| || |||||||    
T  47471396 tccagaaaaaatt-aagaaacaacaaccattaacatcatcatcatc 47471352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 3e-66; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 680 - 916
Target Start/End: Complemental strand, 47445691 - 47445466
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttttaatgatnnnnnnnnnnnnnnnnnnntgtttg 779  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||   ||||||| ||| |||||||                   ||||||    
T  47445691 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatcaaca---tcacacattttctaatgattctctctctct--------tgtttg 47445603  T
Q  780 ttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaacaagggtt 879  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||    
T  47445602 ttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaaaatcatgaacttgttggaaaaagaacaaggttt 47445503  T
Q  880 atgatgaatagcatgaacaccaacatcaacagcaacg 916  Q
    || |||||||||||||||| |||||||||||||||||    
T  47445502 ataatgaatagcatgaacaacaacatcaacagcaacg 47445466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 686 - 731
Target Start/End: Original strand, 36475505 - 36475550
Alignment:
Q  686 aaaaatttaagaaacaacaaccattaacaacaacatcatcatcatc 731  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  36475505 aaaaatttaagaaacaacaaccattaacaacatcatcatcatcatc 36475550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 680 - 728
Target Start/End: Complemental strand, 36475890 - 36475842
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  36475890 tccagaaaaaaattaagaaacaacaaccattaacaacatcatcatcatc 36475842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 680 - 728
Target Start/End: Original strand, 47445200 - 47445248
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  47445200 tccagaaaaaaattaagaaacaacaaccattaacaacatcatcatcatc 47445248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 685 - 728
Target Start/End: Complemental strand, 27585907 - 27585864
Alignment:
Q  685 aaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    |||||| |||||||||||||||||||||||||| ||||||||||    
T  27585907 aaaaaaattaagaaacaacaaccattaacaacatcatcatcatc 27585864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 686 - 728
Target Start/End: Original strand, 27585523 - 27585565
Alignment:
Q  686 aaaaatttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    ||||||||||||||||| |||||||||||||| ||||||||||    
T  27585523 aaaaatttaagaaacaataaccattaacaacatcatcatcatc 27585565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 557 - 601
Target Start/End: Complemental strand, 36476010 - 36475966
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgact 601  Q
    |||||||||||| |||||||| |||||||||||| ||||||||||    
T  36476010 gttagtcaattacccccctccatttgttttggctgttaaatgact 36475966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 600
Target Start/End: Original strand, 36475369 - 36475411
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgac 600  Q
    |||||||||||| ||||||||||||||||||||| |||||||||    
T  36475369 gttagtcaatta-ccccctccgtttgttttggctgttaaatgac 36475411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 557 - 599
Target Start/End: Original strand, 47445084 - 47445126
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatga 599  Q
    |||||||||||| |||||||||||| |||||||| ||||||||    
T  47445084 gttagtcaattacccccctccgtttattttggctgttaaatga 47445126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 602
Target Start/End: Complemental strand, 47445814 - 47445769
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgacta 602  Q
    |||||||||||| |||||||| |||||||||| | |||||||||||    
T  47445814 gttagtcaattacccccctccatttgttttggttgttaaatgacta 47445769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 1e-65; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 774 - 909
Target Start/End: Original strand, 4592917 - 4593052
Alignment:
Q  774 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaaca 873  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  4592917 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaaca 4593016  T
Q  874 agggttatgatgaatagcatgaacaccaacatcaac 909  Q
    ||||||||||||||||||||||||||||||||||||    
T  4593017 agggttatgatgaatagcatgaacaccaacatcaac 4593052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 790 - 916
Target Start/End: Original strand, 10256012 - 10256138
Alignment:
Q  790 gaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaacaagggttatgatgaata 889  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  10256012 gaattcatcaacaacaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaata 10256111  T
Q  890 gcatgaacaccaacatcaacagcaacg 916  Q
    ||||||||| |||||||||||||||||    
T  10256112 gcatgaacaacaacatcaacagcaacg 10256138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 680 - 829
Target Start/End: Original strand, 10255888 - 10256027
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttttaatgatnnnnnnnnnnnnnnnnnnntgtttg 779  Q
    ||||||||||||||||||||||||||||||||||||||      ||||||||||| ||||||||||| |||||||                   ||||||    
T  10255888 tccagaaaaaatttaagaaacaacaaccattaacaaca------tcatcatcaacatcacacactttataatgattctctctctctctct----tgtttg 10255977  T
Q  780 ttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaaca 829  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10255978 ttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaaca 10256027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 680 - 728
Target Start/End: Complemental strand, 4593316 - 4593268
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  4593316 tccagaaaaaaattaagaaacaacaaccattaacaacatcatcatcatc 4593268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 680 - 728
Target Start/End: Complemental strand, 10256404 - 10256356
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  10256404 tccagaaaaaaattaagaaacaacaaccattaacaacatcatcatcatc 10256356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 560 - 601
Target Start/End: Complemental strand, 4593440 - 4593399
Alignment:
Q  560 agtcaattatccccctccgtttgttttggctattaaatgact 601  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  4593440 agtcaattatccccctccgtttgttttggctgttaaatgact 4593399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 557 - 601
Target Start/End: Complemental strand, 10256529 - 10256485
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgact 601  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||    
T  10256529 gttagtcaattaccccgctccgtttgttttggctattaaatgact 10256485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 560 - 602
Target Start/End: Original strand, 10255768 - 10255810
Alignment:
Q  560 agtcaattatccccctccgtttgttttggctattaaatgacta 602  Q
    ||||||||| ||||||||||||||||||||| |||||||||||    
T  10255768 agtcaattacccccctccgtttgttttggctgttaaatgacta 10255810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 692 - 728
Target Start/End: Original strand, 33003114 - 33003150
Alignment:
Q  692 ttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    |||||||||||||||||||||||||| ||||||||||    
T  33003114 ttaagaaacaacaaccattaacaacatcatcatcatc 33003150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 4e-65; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 774 - 920
Target Start/End: Original strand, 14790969 - 14791115
Alignment:
Q  774 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaaca 873  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||    
T  14790969 tgtttgttaccttcttcaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaatatcatgaacttgttggaaaaagaaca 14791068  T
Q  874 agggttatgatgaatagcatgaacaccaacatcaacagcaacgtttc 920  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  14791069 agggttatgatgaatagcatgaacaccaacatcaacatcaacgtttc 14791115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 774 - 916
Target Start/End: Complemental strand, 20112113 - 20111970
Alignment:
Q  774 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaaca 873  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||    
T  20112113 tgtttgttaccttcttgaattaatcaacagcaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaaca 20112014  T
Q  874 agg-gttatgatgaatagcatgaacaccaacatcaacagcaacg 916  Q
    |||  ||||||||||||||||||||| ||||||||||| |||||    
T  20112013 aggttttatgatgaatagcatgaacaacaacatcaacaacaacg 20111970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 682 - 754
Target Start/End: Complemental strand, 20112189 - 20112123
Alignment:
Q  682 cagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttttaatgat 754  Q
    ||||||||||||||||||||||||||||||||||      ||||||||||||| ||||||||||| |||||||    
T  20112189 cagaaaaaatttaagaaacaacaaccattaacaa------catcatcatcaacatcacacactttataatgat 20112123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 680 - 728
Target Start/End: Complemental strand, 14791374 - 14791326
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  14791374 tccagaaaaaaattaagaaacaacaaccattaacaacatcatcatcatc 14791326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 557 - 601
Target Start/End: Complemental strand, 14791493 - 14791449
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgact 601  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||    
T  14791493 gttagtcaattacccccctccgtttgttttggctgttaaatgact 14791449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 774 - 818
Target Start/End: Original strand, 18308867 - 18308911
Alignment:
Q  774 tgtttgttaccttcttgaattaatcaacaacaaccctttggaatt 818  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||    
T  18308867 tgtttgttaccatcttgaattaatcaacaacaactctttggaatt 18308911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 557 - 602
Target Start/End: Complemental strand, 20112315 - 20112271
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgacta 602  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||    
T  20112315 gttagtcaatta-ccccctccgtttgttttggctgttaaatgacta 20112271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 20111588 - 20111629
Alignment:
Q  558 ttagtcaattatccccctccgtttgttttggctattaaatga 599  Q
    ||||||||||| ||||||||||||||||| ||| ||||||||    
T  20111588 ttagtcaattacccccctccgtttgttttagctgttaaatga 20111629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 120; Significance: 6e-61; HSPs: 4)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 680 - 916
Target Start/End: Original strand, 32571 - 32793
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttttaatgatnnnnnnnnnnnnnnnnnnntgtttg 779  Q
    ||||||||||||||||||||||||||||||||||||||      ||||||||||| ||||||||||| |||||||                   ||||||    
T  32571 tccagaaaaaatttaagaaacaacaaccattaacaaca------tcatcatcaacatcacacactttctaatgattctctctctct--------tgtttg 32656  T
Q  780 ttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaacaagggtt 879  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||| ||    
T  32657 ttaccttcttgaattaatcaacaacaaccctttgaaattcatcaacaacagaatgaataatagaaaatatcatgaacttgttggaaaaagaacaaggttt 32756  T
Q  880 atgatgaatagcatgaacaccaacatcaacagcaacg 916  Q
    ||||||||||||||||||| |||||||||||||||||    
T  32757 atgatgaatagcatgaacaacaacatcaacagcaacg 32793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 557 - 602
Target Start/End: Complemental strand, 33183 - 33138
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgacta 602  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||    
T  33183 gttagtcaattacccccctccgtttgttttggctgttaaatgacta 33138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 685 - 728
Target Start/End: Complemental strand, 33054 - 33011
Alignment:
Q  685 aaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    |||||| |||||||||||||||||||||||||| ||||||||||    
T  33054 aaaaaaattaagaaacaacaaccattaacaacatcatcatcatc 33011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 602
Target Start/End: Original strand, 32448 - 32493
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgacta 602  Q
    |||||||||| | ||| ||||||||||||||||| |||||||||||    
T  32448 gttagtcaataacccctctccgtttgttttggctgttaaatgacta 32493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 3e-60; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 774 - 916
Target Start/End: Original strand, 27455219 - 27455361
Alignment:
Q  774 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaaca 873  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||    
T  27455219 tgtttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaaca 27455318  T
Q  874 agggttatgatgaatagcatgaacaccaacatcaacagcaacg 916  Q
    ||| ||||||||||||||||||||| ||||||||||| |||||    
T  27455319 aggtttatgatgaatagcatgaacaacaacatcaacaacaacg 27455361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 814 - 916
Target Start/End: Complemental strand, 49681850 - 49681748
Alignment:
Q  814 gaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaagagaacaagggttatgatgaatagcatgaacaccaacatcaacagca 913  Q
    |||||||||||||||| ||||||||||| ||||||||||||| |||||||||| ||||||| | ||||||||||||||||||||| ||||||||||| ||    
T  49681850 gaattcatcaacaacataatgaataacataaaagatcatgaaattgttggaaaaagaacaacgtttatgatgaatagcatgaacaacaacatcaacaaca 49681751  T
Q  914 acg 916  Q
    |||    
T  49681750 acg 49681748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 680 - 754
Target Start/End: Complemental strand, 49681949 - 49681878
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttttaatgat 754  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||   |||||| ||||||||||| |||||||    
T  49681949 tccataaaaattttaagaaacaacaaccattaacaacaacatcatc---atcaacatcacacactttctaatgat 49681878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 686 - 754
Target Start/End: Original strand, 27455143 - 27455205
Alignment:
Q  686 aaaaatttaagaaacaacaaccattaacaacaacatcatcatcatcaacctcacacactttttaatgat 754  Q
    ||||||||||||||||||||||||||||||      ||||||||||||| ||||||||||| |||||||    
T  27455143 aaaaatttaagaaacaacaaccattaacaa------catcatcatcaacatcacacactttataatgat 27455205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 557 - 601
Target Start/End: Original strand, 620566 - 620610
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgact 601  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||    
T  620566 gttagtcaattacccccctccgtttgttttggctgttaaatgact 620610  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 557 - 601
Target Start/End: Complemental strand, 621575 - 621531
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgact 601  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||    
T  621575 gttagtcaattacccccctccgtttgttttggctgttaaatgact 621531  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 681 - 725
Target Start/End: Complemental strand, 21225058 - 21225014
Alignment:
Q  681 ccagaaaaaatttaagaaacaacaaccattaacaacaacatcatc 725  Q
    |||||||||| |||||||||||||||||||||||||| |||||||    
T  21225058 ccagaaaaaaattaagaaacaacaaccattaacaacatcatcatc 21225014  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 680 - 728
Target Start/End: Original strand, 49681476 - 49681524
Alignment:
Q  680 tccagaaaaaatttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    ||||||||||| |||||||||||||||||||||||||| ||| ||||||    
T  49681476 tccagaaaaaaattaagaaacaacaaccattaacaacatcattatcatc 49681524  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 690 - 728
Target Start/End: Original strand, 21224479 - 21224517
Alignment:
Q  690 atttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  21224479 atttaagaaacaacaaccattaacaacatcatcatcatc 21224517  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 560 - 602
Target Start/End: Original strand, 27455015 - 27455057
Alignment:
Q  560 agtcaattatccccctccgtttgttttggctattaaatgacta 602  Q
    ||||||||| ||||||||||||||||||||| |||||||||||    
T  27455015 agtcaattacccccctccgtttgttttggctgttaaatgacta 27455057  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 599
Target Start/End: Complemental strand, 21226561 - 21226521
Alignment:
Q  558 ttagtcaattatccccctccgtttgttttggctattaaatga 599  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  21226561 ttagtcaatta-ccccctccgtttgttttggctattaaatga 21226521  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 687 - 728
Target Start/End: Complemental strand, 27455620 - 27455579
Alignment:
Q  687 aaaatttaagaaacaacaaccattaacaacaacatcatcatc 728  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  27455620 aaaaattaagaaacaacaaccattaacaacatcatcatcatc 27455579  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 557 - 602
Target Start/End: Complemental strand, 27455753 - 27455708
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaatgacta 602  Q
    |||||||||||| ||||||||||||||||||||  |||||||||||    
T  27455753 gttagtcaattacccccctccgtttgttttggcagttaaatgacta 27455708  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 685 - 725
Target Start/End: Complemental strand, 21226445 - 21226405
Alignment:
Q  685 aaaaaatttaagaaacaacaaccattaacaacaacatcatc 725  Q
    |||||| |||||||||||||||||||||||||| |||||||    
T  21226445 aaaaaaattaagaaacaacaaccattaacaacatcatcatc 21226405  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 596
Target Start/End: Original strand, 11147841 - 11147880
Alignment:
Q  557 gttagtcaattatccccctccgtttgttttggctattaaa 596  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  11147841 gttagtcaattacccccctccgtttgttttggctgttaaa 11147880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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