View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5685_high_5 (Length: 245)
Name: NF5685_high_5
Description: NF5685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5685_high_5 |
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| [»] scaffold1524 (1 HSPs) |
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| [»] scaffold0179 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 7777587 - 7777799
Alignment:
| Q |
17 |
ctggcatagttccctggctaattgcatgatttcttgcagtgtgcgctgcacataatagttttagttataacttcagctacaagttgcagcttcaaataat |
116 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| | |
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| T |
7777587 |
ctggcatagttccttggctaattgcatgatttcttgtagtgtgcgctgcacataatagttttagttataacttcagctccaaattgcagcttcaaatagt |
7777686 |
T |
|
| Q |
117 |
tttacatataacagcgtaccaccaaaacaacccaaaaagaccaatttaaagtcagcttaaccaatatgcataattagtagaagttgaatgtgagcatgat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
7777687 |
tttacatataacagcgtaccaccaaaacaacccaaaaagaccattttaaagtcagcttaaccagtatgcataattagtggaagttgaatgtgagcatgat |
7777786 |
T |
|
| Q |
217 |
aggctacaatttc |
229 |
Q |
| |
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||||||||||||| |
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|
| T |
7777787 |
aggctacaatttc |
7777799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 7792379 - 7792591
Alignment:
| Q |
17 |
ctggcatagttccctggctaattgcatgatttcttgcagtgtgcgctgcacataatagttttagttataacttcagctacaagttgcagcttcaaataat |
116 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
7792379 |
ctggcatagtaccctggctaattgcatgatttcttgtagtgtgcgctgcacataatagttttagttataacttcagctccaagttgcagcttcaaatagt |
7792478 |
T |
|
| Q |
117 |
tttacatataacagcgtaccaccaaaacaacccaaaaagaccaatttaaagtcagcttaaccaatatgcataattagtagaagttgaatgtgagcatgat |
216 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||| |
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| T |
7792479 |
tttacatataacagcgtatcaccaaaacaacccaaaaagaccaatttaaagtcagcttaaccagtaagcataattagtagaagttgaatgggagcatgat |
7792578 |
T |
|
| Q |
217 |
aggctacaatttc |
229 |
Q |
| |
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||||||||||||| |
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| T |
7792579 |
aggctacaatttc |
7792591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 7772136 - 7772194
Alignment:
| Q |
170 |
agcttaaccaatatgcataattagtagaagttgaatgtgagcatgataggctacaattt |
228 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7772136 |
agcttaaccagtatgcataattagttgaagttgaatgtgagcatgataggctacaattt |
7772194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 44311012 - 44311052
Alignment:
| Q |
17 |
ctggcatagttccctggctaattgcatgatttcttgcagtg |
57 |
Q |
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| T |
44311012 |
ctggcatagtttcctggttaattgcatgatttcttgtagtg |
44311052 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 124 - 229
Target Start/End: Original strand, 28327416 - 28327521
Alignment:
| Q |
124 |
ataacagcgtaccaccaaaacaacccaaaaagaccaatttaaagtcagcttaaccaatatgcataattagtagaagttgaatgtgagcatgataggctac |
223 |
Q |
| |
|
|||| ||||||| |||||||||| |||||||||||| ||||| ||| |||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28327416 |
ataatagcgtactaccaaaacaaaccaaaaagaccagtttaatgtcggcttaatcagtatgcataattagtagaagttgaatgtgagcatgataggctac |
28327515 |
T |
|
| Q |
224 |
aatttc |
229 |
Q |
| |
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|||||| |
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|
| T |
28327516 |
aatttc |
28327521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 231
Target Start/End: Original strand, 28331288 - 28331402
Alignment:
| Q |
117 |
tttacatataacagcgtaccaccaaaacaacccaaaaagaccaatttaaagtcagcttaaccaatatgcataattagtagaagttgaatgtgagcatgat |
216 |
Q |
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|
||||| ||||| ||| ||| |||||| || |||||||||||| ||||| ||| |||||| || |||||||||||||||||||||||||| ||||||||| |
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| T |
28331288 |
tttacttataatagcttactaccaaattaaaccaaaaagaccagtttaatgtcggcttaatcagtatgcataattagtagaagttgaatgcgagcatgat |
28331387 |
T |
|
| Q |
217 |
aggctacaatttctg |
231 |
Q |
| |
|
||||||||||||||| |
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|
| T |
28331388 |
aggctacaatttctg |
28331402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1524 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1524
Description:
Target: scaffold1524; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 362 - 458
Alignment:
| Q |
117 |
tttacatataacagcgtaccaccaaaacaacccaaaaagaccaatttaaagtcagcttaaccaatatgcataattagtagaagttgaatgtgagcat |
213 |
Q |
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|
||||| ||||| ||||||| |||||| || |||||||||||| ||||| ||| |||||| || ||||||||||||||||||||||||||||||||| |
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| T |
362 |
tttacttataatagcgtactaccaaattaaaccaaaaagaccagtttaatgtcggcttaatcagtatgcataattagtagaagttgaatgtgagcat |
458 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 11263 - 11223
Alignment:
| Q |
17 |
ctggcatagttccctggctaattgcatgatttcttgcagtg |
57 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||| |
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|
| T |
11263 |
ctggcatagttccctggctaattgcatcttttcttgtagtg |
11223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 6661177 - 6661217
Alignment:
| Q |
17 |
ctggcatagttccctggctaattgcatgatttcttgcagtg |
57 |
Q |
| |
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|||||||| ||||||||||||||||| ||||||||| |||| |
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|
| T |
6661177 |
ctggcataattccctggctaattgcaggatttcttgtagtg |
6661217 |
T |
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