View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5685_low_1 (Length: 575)
Name: NF5685_low_1
Description: NF5685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5685_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Original strand, 10313388 - 10313946
Alignment:
| Q |
1 |
atgtagctgacacacaggaattactgcattttctaatttcagttgaagaagaaaagaaaaaacaggaagctaaattggcagaagagctacattgtttgaa |
100 |
Q |
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| T |
10313388 |
atgtagctgacacacaggaattactgcattttctaatttcagttgaagaagaaaagaaaaaacaggaagctaaattggcagaagagctacattgtttgaa |
10313487 |
T |
|
| Q |
101 |
cgaagatattaaggaggtagaaggaaatcattcgtatggaagtgattcagcatttccatcgtcacaattgaactatctaccttatcatgattcttccagt |
200 |
Q |
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| T |
10313488 |
cgaagatattaaggaggtagaaggaaatcattcgtatggaagtgattcagcatttccatcgtcacaattgaactatctaccttatcatgattcttccagt |
10313587 |
T |
|
| Q |
201 |
aaaattattagtagatcttttccaagttcatttgttgatgaagcaaaatttatgaataacataagtcagctagagaatagttacttctccatgagattcc |
300 |
Q |
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| T |
10313588 |
aaaattattagtagatcttttccaagttcatttgttgatgaagcaaaatttatgaataacataagtcagctagagaatagttacttctccatgagattcc |
10313687 |
T |
|
| Q |
301 |
aaggcccgctcaaggaagctgcagccgccaaaagcagtgataaaagtgtgatggaaaccagatggagattgcctcatttagagaatgttggtaatgagcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10313688 |
aaggcccgctcaaggaagctgcagccgccaaaagcagtgataaaagtgtgatggaaaccagatggagattgcctcatttagagaatgttggtaatgggcc |
10313787 |
T |
|
| Q |
401 |
aaagagaattcaaggttctattggttgtctaggacctttctatgaaggtatatgcaaattcgctcgttacaacaagtttgaagagcgcggaacattgaga |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10313788 |
aaagagaattcaaggttctattggttgtctaggacctttctatgaaggtatatgcaaattcgctcgttacagcaagtttgaagagcgcggaacattgaga |
10313887 |
T |
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| Q |
501 |
aacagtgatcttcttagttctgccaatgtgatatgtgccttaagttttgaccgtgatga |
559 |
Q |
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| T |
10313888 |
aacagtgatcttcttagttctgccaatgtgatatgtgccttaagttttgaccgtgatga |
10313946 |
T |
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