View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5685_low_3 (Length: 328)
Name: NF5685_low_3
Description: NF5685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5685_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 89 - 317
Target Start/End: Original strand, 9166273 - 9166513
Alignment:
| Q |
89 |
attcagtccatgtctgttcttcttatctacttcctcatcttcatcttcctctcctttatcagaggaagga------------tcatcaccagnnnnnnna |
176 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
9166273 |
attcagtccatgtctattcttcttatctacttcctcatcttcatcttcctctcctttatcagaggaaggaccttcatcatcatcatcaccagttttttta |
9166372 |
T |
|
| Q |
177 |
cggcttctcccaccacctgcgttgctttctttgtcatctaacttccaatgttcaccaaatgcagcaggaccattatttgctgctttcatcatccatcttt |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9166373 |
cggcttctcccaccacctgcgttgctttctttgtcatctaacttccaatgttcaccaaatgcagcaggaccattatttgctgctttcatcatccatcttt |
9166472 |
T |
|
| Q |
277 |
gatatccatcagcagtctttttcctattattcatcttctct |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9166473 |
gatatccatcagcagtctttttcctattattcatcttctct |
9166513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 100 - 317
Target Start/End: Original strand, 9154867 - 9155096
Alignment:
| Q |
100 |
gtctgttcttcttatctacttcctcatcttcatcttcctctcctttatcagaggaagga------------tcatcaccagnnnnnnnacggcttctccc |
187 |
Q |
| |
|
|||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| |
|
|
| T |
9154867 |
gtcttttcttcctatctacttcctcgtcttcatcttcctctcctttatcagaggaaggaccttcatcttcatcatcaccagtctttttacggcctctccc |
9154966 |
T |
|
| Q |
188 |
accacctgcgttgctttctttgtcatctaacttccaatgttcaccaaatgcagcaggaccattatttgctgctttcatcatccatctttgatatccatca |
287 |
Q |
| |
|
||| ||||||||||| || |||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9154967 |
accccctgcgttgctctccttgtcatctaacttcccatgttcaccaaatgcagcaggcccattgtttgctgctttcatcatccatctttgatatccatca |
9155066 |
T |
|
| Q |
288 |
gcagtctttttcctattattcatcttctct |
317 |
Q |
| |
|
||||| ||||||||||| |||||||||||| |
|
|
| T |
9155067 |
gcagtttttttcctatttttcatcttctct |
9155096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University