View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5685_low_5 (Length: 312)
Name: NF5685_low_5
Description: NF5685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5685_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 52583888 - 52583598
Alignment:
| Q |
1 |
ttcatgagttacaatctcagaatcgtttgaaagcgcgtaagttttaccctaagaagaagtttaatgctagatttgctccttatgctcctaggaataccac |
100 |
Q |
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| T |
52583888 |
ttcatgagttacaatctcagaatcgtttgaaagcgcgtaagttttaccctaagaagaagtttaatgctagatttgctccttatgctcctaggaataccac |
52583789 |
T |
|
| Q |
101 |
ttcctttattattcgtgctaagaaatctggtggtattgcatcgcttgtatcaccttgtcctgtgactccgtccgtgttgcctacacctattttgtctcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
52583788 |
ttcctttattattcgtgctaagaaatctggtggtattgcatcgcttgtatcaccttgtcctgtgactccggccgtgttgcctacacctattttgtctcct |
52583689 |
T |
|
| Q |
201 |
tcgagggagattttgggagacatggcgaaggaagagtggggtgtggatggatacgggtccatgaagggtttgattaggctgagagatgttc |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583688 |
tcgagggagattttgggagacatggcgaaggaagagtggggtgtggatggatacgggtccatgaagggtttgattaggctgagagatgttc |
52583598 |
T |
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