View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5686-Insertion-2 (Length: 1039)

Name: NF5686-Insertion-2
Description: NF5686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5686-Insertion-2
NF5686-Insertion-2
[»] chr8 (25 HSPs)
chr8 (7-1037)||(17846574-17847633)
chr8 (912-968)||(14807724-14807781)
chr8 (887-968)||(4423965-4424048)
chr8 (912-966)||(28251874-28251929)
chr8 (915-968)||(15072686-15072740)
chr8 (912-968)||(27826959-27827016)
chr8 (912-968)||(27829270-27829327)
chr8 (754-833)||(17849551-17849631)
chr8 (912-966)||(2468405-2468460)
chr8 (912-966)||(15067954-15068009)
chr8 (913-966)||(31162186-31162241)
chr8 (869-935)||(33839268-33839335)
chr8 (915-968)||(3886223-3886277)
chr8 (915-968)||(12517331-12517385)
chr8 (916-968)||(13858789-13858842)
chr8 (912-968)||(18810681-18810738)
chr8 (912-968)||(18812866-18812923)
chr8 (911-970)||(31035040-31035099)
chr8 (915-967)||(15809190-15809244)
chr8 (915-967)||(24873493-24873547)
chr8 (915-967)||(28283531-28283585)
chr8 (915-967)||(32339280-32339334)
chr8 (913-968)||(6375962-6376019)
chr8 (913-968)||(15186015-15186072)
chr8 (903-974)||(31574044-31574113)
[»] chr2 (28 HSPs)
chr2 (749-993)||(33603652-33603899)
chr2 (800-973)||(20589443-20589616)
chr2 (889-975)||(28462584-28462671)
chr2 (889-970)||(35028449-35028531)
chr2 (863-971)||(45156894-45157004)
chr2 (912-968)||(13910349-13910406)
chr2 (912-968)||(19504650-19504707)
chr2 (912-968)||(42064408-42064465)
chr2 (912-966)||(35107193-35107248)
chr2 (749-831)||(45156801-45156883)
chr2 (927-976)||(17897539-17897589)
chr2 (912-968)||(6264450-6264507)
chr2 (912-968)||(27104692-27104749)
chr2 (912-968)||(40032363-40032420)
chr2 (912-967)||(18800608-18800664)
chr2 (915-964)||(22287645-22287695)
chr2 (912-964)||(6259124-6259177)
chr2 (912-968)||(19502316-19502373)
chr2 (912-968)||(21521000-21521057)
chr2 (912-968)||(22407714-22407771)
chr2 (912-968)||(24162517-24162574)
chr2 (913-968)||(40699203-40699260)
chr2 (912-968)||(43623873-43623930)
chr2 (798-874)||(38414429-38414505)
chr2 (798-847)||(11578511-11578558)
chr2 (915-967)||(23452547-23452601)
chr2 (915-967)||(35215902-35215956)
chr2 (913-973)||(13828640-13828701)
[»] chr4 (38 HSPs)
chr4 (820-969)||(12101969-12102119)
chr4 (868-993)||(26557516-26557643)
chr4 (912-968)||(5198391-5198448)
chr4 (912-968)||(22803039-22803096)
chr4 (912-968)||(36919892-36919949)
chr4 (912-968)||(38409170-38409227)
chr4 (912-968)||(48486290-48486347)
chr4 (887-964)||(5637778-5637856)
chr4 (887-968)||(22044695-22044777)
chr4 (912-965)||(24880422-24880476)
chr4 (913-970)||(52043733-52043791)
chr4 (912-968)||(3824878-3824935)
chr4 (912-968)||(9148222-9148279)
chr4 (912-968)||(11434926-11434983)
chr4 (912-968)||(22801167-22801224)
chr4 (912-968)||(24888767-24888824)
chr4 (912-968)||(36921800-36921857)
chr4 (912-968)||(51015217-51015274)
chr4 (915-966)||(40091722-40091774)
chr4 (887-965)||(22046993-22047072)
chr4 (915-965)||(24878963-24879014)
chr4 (913-970)||(28453658-28453717)
chr4 (912-968)||(7941290-7941347)
chr4 (912-968)||(8756555-8756612)
chr4 (911-966)||(25357606-25357663)
chr4 (912-968)||(47274698-47274755)
chr4 (913-968)||(619752-619808)
chr4 (912-967)||(37089680-37089736)
chr4 (915-968)||(17662543-17662598)
chr4 (878-950)||(3982505-3982579)
chr4 (915-967)||(22132705-22132759)
chr4 (915-967)||(47211052-47211106)
chr4 (915-967)||(53405100-53405154)
chr4 (913-968)||(16186142-16186199)
chr4 (915-966)||(22134937-22134990)
chr4 (915-966)||(24348187-24348240)
chr4 (912-968)||(31849904-31849961)
chr4 (912-964)||(52942756-52942809)
[»] chr3 (39 HSPs)
chr3 (802-986)||(7768362-7768548)
chr3 (912-968)||(18099474-18099530)
chr3 (912-968)||(15780757-15780814)
chr3 (912-975)||(13893290-13893354)
chr3 (912-966)||(18162561-18162616)
chr3 (912-966)||(24177176-24177231)
chr3 (912-974)||(46966932-46966995)
chr3 (912-966)||(48361975-48362030)
chr3 (912-965)||(5191550-5191604)
chr3 (913-974)||(26762863-26762925)
chr3 (912-968)||(1321338-1321395)
chr3 (912-968)||(11170301-11170358)
chr3 (912-968)||(22114608-22114665)
chr3 (912-968)||(26720445-26720502)
chr3 (912-968)||(32264346-32264403)
chr3 (915-965)||(10191619-10191670)
chr3 (912-965)||(10084699-10084753)
chr3 (915-968)||(12268269-12268323)
chr3 (912-968)||(3859425-3859482)
chr3 (912-968)||(5522918-5522975)
chr3 (912-968)||(11163047-11163104)
chr3 (913-968)||(23633357-23633414)
chr3 (912-964)||(38889936-38889989)
chr3 (914-976)||(13419774-13419838)
chr3 (918-968)||(53597143-53597195)
chr3 (927-973)||(11007973-11008020)
chr3 (912-966)||(18097206-18097261)
chr3 (912-966)||(45882836-45882891)
chr3 (915-967)||(455802-455856)
chr3 (915-967)||(458179-458233)
chr3 (915-967)||(746650-746704)
chr3 (915-967)||(4104203-4104257)
chr3 (915-967)||(10621846-10621900)
chr3 (914-975)||(16996705-16996767)
chr3 (912-968)||(10956330-10956387)
chr3 (912-968)||(10958626-10958683)
chr3 (912-968)||(24979604-24979661)
chr3 (916-968)||(28761731-28761784)
chr3 (915-966)||(42990181-42990234)
[»] chr6 (23 HSPs)
chr6 (788-966)||(12186376-12186555)
chr6 (912-968)||(8995431-8995488)
chr6 (912-968)||(9019878-9019935)
chr6 (916-968)||(15530427-15530480)
chr6 (912-968)||(15532986-15533043)
chr6 (912-968)||(19227713-19227770)
chr6 (913-964)||(14507484-14507536)
chr6 (912-966)||(32279949-32280004)
chr6 (913-970)||(12937499-12937559)
chr6 (912-968)||(1072182-1072239)
chr6 (916-968)||(15366992-15367045)
chr6 (912-968)||(15541445-15541502)
chr6 (913-973)||(19696394-19696455)
chr6 (912-968)||(30729133-30729190)
chr6 (916-967)||(15346347-15346399)
chr6 (911-965)||(16455732-16455787)
chr6 (913-966)||(12911756-12911812)
chr6 (914-975)||(24542976-24543038)
chr6 (754-831)||(24543101-24543178)
chr6 (915-967)||(30034913-30034967)
chr6 (912-968)||(11983334-11983391)
chr6 (915-966)||(12195822-12195875)
chr6 (915-966)||(28038012-28038065)
[»] chr5 (22 HSPs)
chr5 (914-970)||(29748260-29748317)
chr5 (912-968)||(2818641-2818698)
chr5 (912-968)||(4236546-4236603)
chr5 (912-968)||(21947944-21948001)
chr5 (912-968)||(25921778-25921835)
chr5 (913-970)||(2144895-2144954)
chr5 (912-968)||(31466283-31466340)
chr5 (912-968)||(38882022-38882079)
chr5 (913-965)||(16776075-16776129)
chr5 (912-968)||(12556228-12556285)
chr5 (915-967)||(10586758-10586812)
chr5 (915-967)||(15552154-15552208)
chr5 (915-967)||(25803935-25803989)
chr5 (915-967)||(27910364-27910418)
chr5 (915-967)||(27912449-27912503)
chr5 (912-968)||(2174836-2174893)
chr5 (915-966)||(3373348-3373401)
chr5 (915-966)||(18468926-18468979)
chr5 (912-968)||(20507767-20507824)
chr5 (916-968)||(36208501-36208554)
chr5 (912-968)||(36402633-36402689)
chr5 (912-964)||(39798005-39798058)
[»] chr1 (37 HSPs)
chr1 (914-993)||(49958963-49959043)
chr1 (912-968)||(13214998-13215055)
chr1 (913-973)||(26613542-26613603)
chr1 (912-968)||(28207373-28207430)
chr1 (912-968)||(28840595-28840652)
chr1 (912-968)||(41646837-41646894)
chr1 (911-970)||(8347575-8347635)
chr1 (912-966)||(15823463-15823518)
chr1 (912-968)||(13761754-13761811)
chr1 (912-968)||(30790701-30790758)
chr1 (912-968)||(38925785-38925842)
chr1 (912-968)||(47451565-47451622)
chr1 (912-968)||(51749956-51750013)
chr1 (912-968)||(51752282-51752339)
chr1 (913-966)||(27916415-27916469)
chr1 (915-968)||(28842413-28842467)
chr1 (927-968)||(43104091-43104133)
chr1 (915-974)||(46782972-46783035)
chr1 (915-967)||(3579926-3579979)
chr1 (912-968)||(6822932-6822989)
chr1 (912-968)||(6823801-6823858)
chr1 (912-968)||(10400135-10400192)
chr1 (912-968)||(39462436-39462493)
chr1 (913-968)||(42922151-42922208)
chr1 (916-975)||(26979825-26979885)
chr1 (915-968)||(24325575-24325630)
chr1 (915-967)||(2510636-2510690)
chr1 (915-967)||(9459731-9459785)
chr1 (915-967)||(9463558-9463612)
chr1 (915-968)||(20302379-20302433)
chr1 (915-967)||(31735833-31735887)
chr1 (915-967)||(46432036-46432090)
chr1 (915-967)||(47906183-47906237)
chr1 (912-968)||(49495506-49495564)
chr1 (912-950)||(49687457-49687495)
chr1 (919-970)||(12302815-12302868)
chr1 (913-973)||(30738928-30738989)
[»] scaffold0060 (1 HSPs)
scaffold0060 (754-859)||(9914-10020)
[»] scaffold0131 (1 HSPs)
scaffold0131 (912-968)||(14945-15002)
[»] chr7 (28 HSPs)
chr7 (912-968)||(35556-35613)
chr7 (912-968)||(27306534-27306591)
chr7 (912-968)||(40837047-40837104)
chr7 (912-968)||(44491-44548)
chr7 (753-845)||(11084225-11084318)
chr7 (912-968)||(22392400-22392457)
chr7 (912-962)||(26804500-26804551)
chr7 (912-964)||(1049604-1049657)
chr7 (912-968)||(3878498-3878559)
chr7 (913-968)||(7188470-7188527)
chr7 (912-964)||(45366473-45366526)
chr7 (919-970)||(9680748-9680800)
chr7 (917-968)||(18567545-18567597)
chr7 (913-968)||(25542459-25542515)
chr7 (917-968)||(31435352-31435404)
chr7 (913-970)||(6048599-6048658)
chr7 (913-975)||(42006493-42006556)
chr7 (915-967)||(3035646-3035700)
chr7 (915-967)||(7349585-7349639)
chr7 (915-967)||(11757153-11757207)
chr7 (915-967)||(18345466-18345520)
chr7 (915-967)||(28485491-28485545)
chr7 (915-967)||(38393911-38393965)
chr7 (915-967)||(38396215-38396269)
chr7 (915-967)||(43253830-43253884)
chr7 (915-966)||(1606399-1606452)
chr7 (914-974)||(6067491-6067552)
chr7 (913-968)||(20091846-20091903)
[»] scaffold0025 (2 HSPs)
scaffold0025 (887-966)||(73334-73414)
scaffold0025 (887-968)||(69600-69682)
[»] scaffold0339 (1 HSPs)
scaffold0339 (912-968)||(3923-3980)
[»] scaffold0250 (1 HSPs)
scaffold0250 (912-968)||(2806-2863)
[»] scaffold0224 (1 HSPs)
scaffold0224 (913-968)||(16123-16180)


Alignment Details
Target: chr8 (Bit Score: 747; Significance: 0; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 747; E-Value: 0
Query Start/End: Original strand, 7 - 1037
Target Start/End: Original strand, 17846574 - 17847633
Alignment:
Q  7 atcttcggcaagcaaagaggatacacccagtctccgtaacattaatcccatcctaatgaaaggcatttacaataacttttgaatatgaactgaagtcgag 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  17846574 atcttcggcaagcaaagaggatacacccagtctccgtaacattaatctcatcctaatgaaaggcatttacaataacttttgaatatgaactgaagtcgac 17846673  T
Q  107 attatcaaaagccaaatcgcgcatccactccaatgcatagaataaagccaatgtttcccctaccgggactgatcacttggcaaaatatgaataaatttag 206  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  17846674 attatcaaaagccaaattgctcatccactccaatgcatagaataaagccaatgtttcccctacggggactgaacacttggcaaaatatgaataaatttag 17846773  T
Q  207 caagcacaaaagtaccttcctcgccgcgaatgcaaatgcctattccttttcgattcaactggttggagaaagatgcatcaatgttgcatttatcacgacc 306  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  17846774 caagcacaaaagtaccttcctcgccgcgaatgcaaatacctattccttttcaattcaactggttggagaaagatgcatcaatgttgcatttaacacgacc 17846873  T
Q  307 atgagctggtggctgccatcttaacatggttacatcgaaacttctcacctaagtgttctca-ttctgaagctcgtcacttgcatggcttggtgttgctgt 405  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||    
T  17846874 atgagctggtggctgccatcttaacatggttacatcggaacttctcacctaagtgttctcatttctgaagcttgtcacttgcatggcttggtgtcgctgt 17846973  T
Q  406 taaattaatattgtcactattttgttgtgttgtgtgtggcccctgttgagttgcagtaaccacattcgccattttccaatcctctaccatacatacatcc 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  17846974 taaattaatattgtcactattttgttgtgttgtgtgtggccccttctgagttgcagtaaccgcattcgccattttccaatcctctaccatacatacaacc 17847073  T
Q  506 ctgtccacaacccatgcagtcgttttcgtgatgtcctgccacaacttgaggtctagtgtttccacatgctccaaatgcttattgcaaagcgttgagcatg 605  Q
    |||||||  |||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||    
T  17847074 ctgtccatcacctgtgcagtcgttttcgtgatgtcctgccacaacttgaggtctagtgtttcgacatgctccaaatgcttattgcaaagcg-cgagcatg 17847172  T
Q  606 atcagcttccatatcatcaaggaacttaaaaatacaatcaattgttgaacctatctgaataaacagccagttcaccatatcccaaagtccgctacgattc 705  Q
    |||| || ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  17847173 atcatctgccatatcatcaagcaacttaaaaatacaatcagttgttgaacctatctgaataaacatccagttcaccatatcccaaagtccgctacaattc 17847272  T
Q  706 gaaattagaatagcaaaatagtagttgnnnnnnntatgattaatgttaaaagtgactcaaaattgaagtttgagaatctgcc------------------ 787  Q
     |||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| ||                      
T  17847273 caaattagaatagcataatagtagttgaaaaaaatatgattaatgttaaaagtgactcaaaattgaagtttgagaatctaccaaaatagtagcacaattt 17847372  T
Q  788 ---aaatagtagcacgatttttggactagatttggcacttcccattctggaaaaatcgtagtatgatctggcaaagttgtagtacgattttacgctgatg 884  Q
       |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||| ||||||||||||||||||||    
T  17847373 ggaaaatcgtagcacgttttttggactagatttggcacttcccattctggaaaaatcgtagtacgttctggcaaaattgcagtacgattttacgctgatg 17847472  T
Q  885 cagaaaaatagaaacata-tttcagcttcagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcagatgaaaaacatgtat 982  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||     
T  17847473 cagaaaaatagaaacatattttcagcttcagatttgttccaaattttgagggatacttttactataaatatagaccttgtatcagatgcaaaacatgtag 17847572  T
Q  983 agagtagaaaa--caggtt---aaatgaacaacaaactaagg-ttatagagatttctctag 1037  Q
    |||||||||||   |||||   |||||||||||||||||||| ||||||||||||||||||    
T  17847573 agagtagaaaaacaaggtttagaaatgaacaacaaactaaggtttatagagatttctctag 17847633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 14807724 - 14807781
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  14807724 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgtatcaga 14807781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 887 - 968
Target Start/End: Original strand, 4423965 - 4424048
Alignment:
Q  887 gaaaaatagaaacatatttcagctt-cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||||||||||||||  |  | ||||||||||||||||||| || |||||||||||||| |||| |||||||||||||||    
T  4423965 gaaaaatagaaacatatttttgagtgcagatttgttccaaattttaagcgatacttttactataaatacagaccttgtatcaga 4424048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 912 - 966
Target Start/End: Complemental strand, 28251929 - 28251874
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatca 966  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||    
T  28251929 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgtatca 28251874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 915 - 968
Target Start/End: Original strand, 15072686 - 15072740
Alignment:
Q  915 atttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  15072686 atttgttccaaattttaagcgatacttttactataaatatagaccttgtatcaga 15072740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 27826959 - 27827016
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||| ||||||||||||    
T  27826959 cagatttgttccaaattttaagcgatacttttactataaatataggccttgtatcaga 27827016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 27829270 - 27829327
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||| ||||||||||||    
T  27829270 cagatttgttccaaattttaagcgatacttttactataaatataggccttgtatcaga 27829327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 754 - 833
Target Start/End: Original strand, 17849551 - 17849631
Alignment:
Q  754 aaagtgactcaaaattgaagtttgagaatctgccaaa-tagtagcacgatttttggactagatttggcacttcccattctg 833  Q
    |||||||||||||||||| ||||| |||||||||||| |   | |||||||||||||| | ||||||||||||| ||||||    
T  17849551 aaagtgactcaaaattgatgtttgggaatctgccaaaatcacaacacgatttttggaccaaatttggcacttcctattctg 17849631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 912 - 966
Target Start/End: Complemental strand, 2468460 - 2468405
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatca 966  Q
    |||||||||||||||| || || |||||||||||||| ||||||||||||||||||    
T  2468460 cagatttgttccaaatgttaagcgatacttttactataaatatagaccttgtatca 2468405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 912 - 966
Target Start/End: Original strand, 15067954 - 15068009
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatca 966  Q
    ||||||||||||||||||| || |||||||||||||| |||||| |||||||||||    
T  15067954 cagatttgttccaaattttaagcgatacttttactataaatataaaccttgtatca 15068009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 913 - 966
Target Start/End: Original strand, 31162186 - 31162241
Alignment:
Q  913 agatttgttccaaattt-tgagggatacttttactat-aatatagaccttgtatca 966  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  31162186 agatttgttccaattttatgagggatacttttactataaatatagaccttgtatca 31162241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 869 - 935
Target Start/End: Complemental strand, 33839335 - 33839268
Alignment:
Q  869 cgattttacgctgatgcagaaaaatagaaacatattt-cagcttcagatttgttccaaattttgaggg 935  Q
    ||||||| |||||||| ||||||||| |||| ||||| |||| | |||||||||||||||||||||||    
T  33839335 cgattttgcgctgatggagaaaaataaaaacgtattttcagcatgagatttgttccaaattttgaggg 33839268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 915 - 968
Target Start/End: Complemental strand, 3886277 - 3886223
Alignment:
Q  915 atttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||||||||||| || |||||||||||||| ||||||||| ||||||||||    
T  3886277 atttgttccaaattttaagcgatacttttactataaatatagactttgtatcaga 3886223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 915 - 968
Target Start/End: Complemental strand, 12517385 - 12517331
Alignment:
Q  915 atttgttccaaattttgagggatacttttactata-atatagaccttgtatcaga 968  Q
    |||||||||||||||| || ||||||||||||||| ||||| |||||||||||||    
T  12517385 atttgttccaaattttaagcgatacttttactatatatatataccttgtatcaga 12517331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 916 - 968
Target Start/End: Complemental strand, 13858842 - 13858789
Alignment:
Q  916 tttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||||| || ||||||||||||||||||| ||||||||| ||||||||||    
T  13858842 tttgttccaatttatgagggatacttttactataaatatagactttgtatcaga 13858789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 18810681 - 18810738
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||||| |||||||| ||||| ||||||||||| |||||||| |||||||||||    
T  18810681 cagatttgttacaaattttaagggaaacttttactataaatatagatcttgtatcaga 18810738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 18812866 - 18812923
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||||| |||||||| ||||| ||||||||||| |||||||| |||||||||||    
T  18812866 cagatttgttacaaattttaagggaaacttttactataaatatagatcttgtatcaga 18812923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 911 - 970
Target Start/End: Original strand, 31035040 - 31035099
Alignment:
Q  911 tcagatttgttccaaattttgagggatacttttactataa-tatagaccttgtatcagatg 970  Q
    ||||||||||||||| |||| ||| ||| ||||||||||| ||||||||||||||||||||    
T  31035040 tcagatttgttccaattttttagg-atatttttactataaatatagaccttgtatcagatg 31035099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Original strand, 15809190 - 15809244
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  15809190 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 15809244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Complemental strand, 24873547 - 24873493
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  24873547 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 24873493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Complemental strand, 28283585 - 28283531
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  28283585 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 28283531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Original strand, 32339280 - 32339334
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  32339280 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 32339334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 913 - 968
Target Start/End: Original strand, 6375962 - 6376019
Alignment:
Q  913 agatttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcaga 968  Q
    |||||| |||||| ||| || |||||||||||||||||| ||||||||||||||||||    
T  6375962 agatttattccaattttatgcgggatacttttactataaatatagaccttgtatcaga 6376019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 913 - 968
Target Start/End: Complemental strand, 15186072 - 15186015
Alignment:
Q  913 agatttgttccaaattt-tgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||| ||| ||||||||||||||||||| |||||| || ||||||||||    
T  15186072 agatttgttccaattttatgagggatacttttactataaatataaactttgtatcaga 15186015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 903 - 974
Target Start/End: Complemental strand, 31574113 - 31574044
Alignment:
Q  903 tttcagcttcagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcagatgaaaa 974  Q
    ||||||| | || |||||||||||||||||  || ||||||||||| ||||||||||||||| ||||||||||    
T  31574113 tttcagcgtgagttttgttccaaattttga--gagacttttactataaatatagaccttgta-cagatgaaaa 31574044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 3e-63; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 749 - 993
Target Start/End: Original strand, 33603652 - 33603899
Alignment:
Q  749 tgttaaaagtgactcaaaattgaagtttgagaatctgccaaa-tagtagcacgatttttggactagatttggcacttcccattctggaaaaatcgtagta 847  Q
    |||| |||||| |||||||||||||||||||||||||||||| | ||||||| |||||||||| |||||||||||||||||||| | ||||||||||| |    
T  33603652 tgttgaaagtgcctcaaaattgaagtttgagaatctgccaaaatcgtagcacaatttttggaccagatttggcacttcccattcggaaaaaatcgtagca 33603751  T
Q  848 tgatctggcaaagttgtagtacgattttacgctgatgcagaaaaatagaaacata-tttcagcttcagatttgttccaaattttgagggatacttttact 946  Q
     ||||||||||| |  ||||| ||||||| ||||||||||||||| ||||||||| ||||||| | ||||||||||||| || | |||||||||||||||    
T  33603752 cgatctggcaaaatcatagtatgattttaggctgatgcagaaaaacagaaacatattttcagcgtgagatttgttccaatttgttagggatacttttact 33603851  T
Q  947 at-aatatagaccttgtatcagatgaaaaacatgtatagagtagaaaa 993  Q
    || |||||| ||||||||| ||||||||| || ||| |||||||||||    
T  33603852 ataaatataaaccttgtattagatgaaaatcaggtagagagtagaaaa 33603899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 800 - 973
Target Start/End: Original strand, 20589443 - 20589616
Alignment:
Q  800 gatttttggactagatttggcacttcccattctggaaaaatcgtagtatgatctggcaaagttgtagtacgattttacgctgatgcagaaaaatagaaac 899  Q
    |||||||||||||| ||| | |||||  |||||||||||||||||||| ||||||| ||| | | ||||||||||||||||| |||| || |    ||||    
T  20589443 gatttttggactagtttttggacttctgattctggaaaaatcgtagtacgatctggaaaaatcgcagtacgattttacgctggtgcataata----aaac 20589538  T
Q  900 ata--tttcagcttcagatttgttccaaattttgaggga-tacttttactat-aatatagaccttgtatcagatgaaa 973  Q
     ||  ||||||| |  |||||||||||| |||||||||| | |||||||||| |||||||||||||||||||||||||    
T  20589539 gtaattttcagcgtgcgatttgttccaatttttgagggattgcttttactataaatatagaccttgtatcagatgaaa 20589616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 889 - 975
Target Start/End: Complemental strand, 28462671 - 28462584
Alignment:
Q  889 aaaatagaaacatattt-cagcttcagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcagatgaaaaa 975  Q
    ||||||||||||||||| ||| | ||||||||||||||||||| |||| |||||||||||| |||||| ||||||||||||||| ||||    
T  28462671 aaaatagaaacatattttcag-tgcagatttgttccaaattttaagggttacttttactataaatataaaccttgtatcagatgcaaaa 28462584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 889 - 970
Target Start/End: Original strand, 35028449 - 35028531
Alignment:
Q  889 aaaatagaaacatatttcagcttcagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcagatg 970  Q
    |||||| || ||||||| || || ||||||||||||| |||| ||||||||||||||||| ||||||||| ||||||||||||    
T  35028449 aaaataaaatcatattttaggttgagatttgttccaattttttagggatacttttactataaatatagacattgtatcagatg 35028531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 863 - 971
Target Start/End: Original strand, 45156894 - 45157004
Alignment:
Q  863 gtagtacgattttacgctgatgcagaaaaatagaaacatatttc-agcttcagatttgttccaaattttgagggatacttttactat-aatatagacctt 960  Q
    |||| ||||||||||||||||||||||||| | |||| |||||  ||     |||||||||||||||||||||||| |||||||||| ||||||||||||    
T  45156894 gtagcacgattttacgctgatgcagaaaaacataaacgtatttttaggcgtggatttgttccaaattttgagggatgcttttactataaatatagacctt 45156993  T
Q  961 gtatcagatga 971  Q
     ||||| ||||    
T  45156994 atatcaaatga 45157004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 13910406 - 13910349
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  13910406 cagatttgttccaaattttaagggaaacttttactataaatatagaccttgtatcaga 13910349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 19504707 - 19504650
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  19504707 cagatttgttccaaattttaagggaaacttttactataaatatagaccttgtatcaga 19504650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 42064408 - 42064465
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  42064408 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgtatcaga 42064465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 912 - 966
Target Start/End: Original strand, 35107193 - 35107248
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatca 966  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||    
T  35107193 cagatttgttccaaattttaagggatacttttactataaatatagacattgtatca 35107248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 749 - 831
Target Start/End: Original strand, 45156801 - 45156883
Alignment:
Q  749 tgttaaaagtgactcaaaattgaagtttgagaatctgcc-aaatagtagcacgatttttggactagatttggcacttcccattc 831  Q
    |||| ||||||| |||||||||||||||  ||||||||| |||| |||||||||  ||||||||||| ||||||||||||||||    
T  45156801 tgttgaaagtgattcaaaattgaagtttaggaatctgccaaaatcgtagcacga-atttggactagaattggcacttcccattc 45156883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 927 - 976
Target Start/End: Complemental strand, 17897589 - 17897539
Alignment:
Q  927 ttttgagggatacttttactataa-tatagaccttgtatcagatgaaaaac 976  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  17897589 ttttgagggatacttttactataaatatagaccttgtatcagatgtaaaac 17897539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 6264507 - 6264450
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||| ||||||||| ||||||||||||||||||||    
T  6264507 cagatttgttccaaattttaagcgatatttttactataaatatagaccttgtatcaga 6264450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 27104692 - 27104749
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||    
T  27104692 cagatttgttccaaattttaagcgaaacttttactataaatatagaccttgtatcaga 27104749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 40032420 - 40032363
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||||||||| |||| || |||||||||||||| ||||||||||||||||||||    
T  40032420 cagatttgttccaagttttaagcgatacttttactataaatatagaccttgtatcaga 40032363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 912 - 967
Target Start/End: Complemental strand, 18800664 - 18800608
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcag 967  Q
    ||||||||||||||||||| |  |||||||||||||| |||||||||||||||||||    
T  18800664 cagatttgttccaaattttaaacgatacttttactataaatatagaccttgtatcag 18800608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 915 - 964
Target Start/End: Complemental strand, 22287695 - 22287645
Alignment:
Q  915 atttgttccaaattttgagggatacttttactat-aatatagaccttgtat 964  Q
    |||||||||||||||| || |||||||||||||| ||||||||||||||||    
T  22287695 atttgttccaaattttaagcgatacttttactataaatatagaccttgtat 22287645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 964
Target Start/End: Complemental strand, 6259177 - 6259124
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtat 964  Q
    |||| |||||||||||||| || |||||||||||||| ||||||||||||||||    
T  6259177 cagacttgttccaaattttaagcgatacttttactataaatatagaccttgtat 6259124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 19502373 - 19502316
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||| |||||||||| ||||| | ||||||||| ||||||||||||||||||||    
T  19502373 cagatttgatccaaattttaagggaaaattttactataaatatagaccttgtatcaga 19502316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 21521057 - 21521000
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||| ||| || |||||||||||||| |||||| |||||||||||||    
T  21521057 cagatttgttccaaaatttaagcgatacttttactataaatataaaccttgtatcaga 21521000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 22407771 - 22407714
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||| ||||||| ||  ||||||||||||| ||||||||||||||||||||    
T  22407771 cagatttgttcaaaattttaagcaatacttttactataaatatagaccttgtatcaga 22407714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 24162574 - 24162517
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||||| |||||||| || || ||||||||||| ||||||||||||||||||||    
T  24162574 cagatttgtttcaaattttaagcgaaacttttactataaatatagaccttgtatcaga 24162517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 913 - 968
Target Start/End: Original strand, 40699203 - 40699260
Alignment:
Q  913 agatttgttccaaattt-tgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||||||||||| ||||||    
T  40699203 agatttgttccaattttctgagggatacttttactataaatatagaccttgcatcaga 40699260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 43623930 - 43623873
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| ||  ||||||||||||| || |||||||||||||||||    
T  43623930 cagatttgttccaaattttaagcaatacttttactataaaaatagaccttgtatcaga 43623873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 798 - 874
Target Start/End: Complemental strand, 38414505 - 38414429
Alignment:
Q  798 acgatttttggactagatttggcacttcccattctggaaaaatcgtagtatgatctggcaaagttgtagtacgattt 874  Q
    ||||||||||||| ||| ||||||||| ||||||   |||||||| || ||||||||||||| | | ||||||||||    
T  38414505 acgatttttggaccagaattggcactttccattcgtaaaaaatcggagcatgatctggcaaaatcggagtacgattt 38414429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 798 - 847
Target Start/End: Complemental strand, 11578558 - 11578511
Alignment:
Q  798 acgatttttggactagatttggcacttcccattctggaaaaatcgtagta 847  Q
    ||||||||||||  |||||||||||||||  |||||||||||||||||||    
T  11578558 acgatttttggatcagatttggcacttcc--ttctggaaaaatcgtagta 11578511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Complemental strand, 23452601 - 23452547
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  23452601 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 23452547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Complemental strand, 35215956 - 35215902
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  35215956 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 35215902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 913 - 973
Target Start/End: Complemental strand, 13828701 - 13828640
Alignment:
Q  913 agatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcagatgaaa 973  Q
    ||||||||||||| |||| |||||| |||||||||| ||||||||  |||||| ||||||||    
T  13828701 agatttgttccaattttttagggattcttttactataaatatagaagttgtatgagatgaaa 13828640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 1e-25; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 820 - 969
Target Start/End: Original strand, 12101969 - 12102119
Alignment:
Q  820 cacttcccattctggaaaaatcgtagtatgatctggcaaagttgtagtacgattttacgctgatgcagaaaaatagaaacata-tttcagcttcagattt 918  Q
    |||||||||||||||||||||| ||||| ||||||| ||| | |||||||||||||||||||||||| ||||||| |||| || |||| || | ||||||    
T  12101969 cacttcccattctggaaaaatcatagtacgatctgg-aaaatcgtagtacgattttacgctgatgcataaaaata-aaacgtattttctgcgtgagattt 12102066  T
Q  919 gttccaaattttgaggga-tacttttactat-aatatagaccttgtatcagat 969  Q
    ||||||| |||| ||||| | |||||||||| |||||||| ||||||||||||    
T  12102067 gttccaattttttagggatttcttttactataaatatagatcttgtatcagat 12102119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 868 - 993
Target Start/End: Original strand, 26557516 - 26557643
Alignment:
Q  868 acgattttacgctgatgcagaaaaatagaaacatatttc--agcttcagatttgttccaaattttgagggatacttttactat-aatatagaccttgtat 964  Q
    |||||||||| || ||||||||||||||||||||||||   ||| |  |||||||||||| |||||||||||| ||||||||| |||||| |||||||||    
T  26557516 acgattttacacttatgcagaaaaatagaaacatatttttaagcatg-gatttgttccaatttttgagggataattttactataaatataaaccttgtat 26557614  T
Q  965 cagatgaaaaacatgtatagagtagaaaa 993  Q
     |||||||||  | ||| |||||||||||    
T  26557615 tagatgaaaattaggtagagagtagaaaa 26557643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 5198391 - 5198448
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  5198391 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgtatcaga 5198448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 22803096 - 22803039
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  22803096 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgtatcaga 22803039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 36919949 - 36919892
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  36919949 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgtatcaga 36919892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 38409170 - 38409227
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  38409170 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgtatcaga 38409227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 48486290 - 48486347
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  48486290 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgtatcaga 48486347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 887 - 964
Target Start/End: Complemental strand, 5637856 - 5637778
Alignment:
Q  887 gaaaaatagaaacatatttcagcttcagatttgttccaaattttgagggatacttttactat-aatatagaccttgtat 964  Q
    |||||| |||||| |||||  | | ||||||||||||||||||| || |||||||||||||| ||||||||||||||||    
T  5637856 gaaaaacagaaacgtattttgggtgcagatttgttccaaattttaagcgatacttttactataaatatagaccttgtat 5637778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 887 - 968
Target Start/End: Complemental strand, 22044777 - 22044695
Alignment:
Q  887 gaaaaatagaaacatatttcagcttcagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||| ||||||||||||    | ||||||||||||||||||| || |||||||||||||| ||||||| ||||||||||||    
T  22044777 gaaaaacagaaacatatttttagtgcagatttgttccaaattttaagcgatacttttactataaatataggccttgtatcaga 22044695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 912 - 965
Target Start/End: Original strand, 24880422 - 24880476
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatc 965  Q
    ||||||||||||||||||| || |||||||||||||| |||||||||||||||||    
T  24880422 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgtatc 24880476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 913 - 970
Target Start/End: Complemental strand, 52043791 - 52043733
Alignment:
Q  913 agatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcagatg 970  Q
    ||||||||||||| |||| |||||| |||||||||| ||||||||||||||||||||||    
T  52043791 agatttgttccaattttttagggatgcttttactataaatatagaccttgtatcagatg 52043733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 3824935 - 3824878
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| ||  ||||||||||||| ||||||||||||||||||||    
T  3824935 cagatttgttccaaattttaagcaatacttttactataaatatagaccttgtatcaga 3824878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 9148222 - 9148279
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||| ||||||||||||    
T  9148222 cagatttgttccaaattttaagcgatacttttactataaatataggccttgtatcaga 9148279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 11434926 - 11434983
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||    
T  11434926 cagatttgttccaaattttaagcgaaacttttactataaatatagaccttgtatcaga 11434983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 22801224 - 22801167
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||||| |||||||| || |||||||||||||| ||||||||||||||||||||    
T  22801224 cagatttgtttcaaattttaagcgatacttttactataaatatagaccttgtatcaga 22801167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 24888767 - 24888824
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| ||  ||||||||||||| ||||||||||||||||||||    
T  24888767 cagatttgttccaaattttaagcaatacttttactataaatatagaccttgtatcaga 24888824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 36921857 - 36921800
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || ||||||||||| || ||||||||||||||||||||    
T  36921857 cagatttgttccaaattttaagcgatacttttacaataaatatagaccttgtatcaga 36921800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 51015217 - 51015274
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||| ||||||||||    
T  51015217 cagatttgttccaaattttaagcgatacttttactataaatatagactttgtatcaga 51015274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 915 - 966
Target Start/End: Complemental strand, 40091774 - 40091722
Alignment:
Q  915 atttgttccaaattttgagggatacttttactat-aatatagaccttgtatca 966  Q
    |||||||||||||||| || |||||||||||||| ||||||||||||||||||    
T  40091774 atttgttccaaattttaagcgatacttttactataaatatagaccttgtatca 40091722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 887 - 965
Target Start/End: Complemental strand, 22047072 - 22046993
Alignment:
Q  887 gaaaaatagaaacatatttcagcttcagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatc 965  Q
    |||||| ||||||||||||    | ||||||||||||||||||| || |||||||||||||| ||||||| |||||||||    
T  22047072 gaaaaacagaaacatatttttagtgcagatttgttccaaattttaagcgatacttttactataaatataggccttgtatc 22046993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 915 - 965
Target Start/End: Original strand, 24878963 - 24879014
Alignment:
Q  915 atttgttccaaattttgagggatacttttactat-aatatagaccttgtatc 965  Q
    |||||||||||||||| || |||||||||||||| |||||||||||||||||    
T  24878963 atttgttccaaattttaagcgatacttttactataaatatagaccttgtatc 24879014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 913 - 970
Target Start/End: Original strand, 28453658 - 28453717
Alignment:
Q  913 agatttgttccaaat-tttgagggatacttttactataa-tatagaccttgtatcagatg 970  Q
    ||||||||||||| | ||||||||||| ||||||||||| ||||||||||||||||||||    
T  28453658 agatttgttccaattatttgagggatatttttactataaatatagaccttgtatcagatg 28453717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 7941290 - 7941347
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || || ||||||||||| ||||||||| ||||||||||    
T  7941290 cagatttgttccaaattttaagcgaaacttttactataaatatagacgttgtatcaga 7941347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 8756612 - 8756555
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||| | |  |||||||||||||| ||||||||||||||||||||    
T  8756612 cagatttgttccaaattataaacgatacttttactataaatatagaccttgtatcaga 8756555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 911 - 966
Target Start/End: Original strand, 25357606 - 25357663
Alignment:
Q  911 tcagatttgttccaaatttt-gagggatacttttactat-aatatagaccttgtatca 966  Q
    ||||||||||||||| |||  |||||||||||||||||| ||||||||||||||||||    
T  25357606 tcagatttgttccaattttacgagggatacttttactataaatatagaccttgtatca 25357663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 47274698 - 47274755
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||||| |||||||| ||  ||||||||||||| ||||||||||||||||||||    
T  47274698 cagatttgtttcaaattttaagcaatacttttactataaatatagaccttgtatcaga 47274755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 913 - 968
Target Start/End: Complemental strand, 619808 - 619752
Alignment:
Q  913 agatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||| ||||||||||| |  |||||||||||||| ||||||||||||||||||||    
T  619808 agattttttccaaattttaaacgatacttttactataaatatagaccttgtatcaga 619752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 912 - 967
Target Start/End: Complemental strand, 37089736 - 37089680
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcag 967  Q
    ||||||||||||||||||| ||  | ||||||||||| |||||||||||||||||||    
T  37089736 cagatttgttccaaattttaagcaaaacttttactataaatatagaccttgtatcag 37089680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 915 - 968
Target Start/End: Complemental strand, 17662598 - 17662543
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcaga 968  Q
    ||||||||||||||| ||||  ||||||||||||||| ||||||||||||||||||    
T  17662598 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcaga 17662543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 878 - 950
Target Start/End: Complemental strand, 3982579 - 3982505
Alignment:
Q  878 gctgatgcag-aaaaatagaaacatattt-cagcttcagatttgttccaaattttgagggatacttttactataa 950  Q
    |||||||||| |||||||||||||||||| |||| | | ||||||||||| |||| |||||  ||||||||||||    
T  3982579 gctgatgcaggaaaaatagaaacatattttcagcatgaaatttgttccaattttttagggaagcttttactataa 3982505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Complemental strand, 22132759 - 22132705
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  22132759 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 22132705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Complemental strand, 47211106 - 47211052
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  47211106 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 47211052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Original strand, 53405100 - 53405154
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  53405100 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 53405154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 913 - 968
Target Start/End: Complemental strand, 16186199 - 16186142
Alignment:
Q  913 agatttgttccaaattttg-agggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||| ||| | ||||||||||||||||| |||||| |||||||||||||    
T  16186199 agatttgttccaattttaggagggatacttttactataaatataaaccttgtatcaga 16186142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 915 - 966
Target Start/End: Complemental strand, 22134990 - 22134937
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatca 966  Q
    ||||||||||||||| ||||  ||||||||||||||| ||||||||||||||||    
T  22134990 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatca 22134937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 915 - 966
Target Start/End: Original strand, 24348187 - 24348240
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatca 966  Q
    ||||||||||||||| ||||  ||||||||||||||| ||||||||||||||||    
T  24348187 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatca 24348240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 31849961 - 31849904
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttacta-taatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||  |||||||  |||||||||||    
T  31849961 cagatttgttccaaattttaagcgatacttttactagaaatataggtcttgtatcaga 31849904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 912 - 964
Target Start/End: Complemental strand, 52942809 - 52942756
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtat 964  Q
    ||||||||||||||||||| ||  ||||||| ||||| ||||||||||||||||    
T  52942809 cagatttgttccaaattttaagtaatactttcactataaatatagaccttgtat 52942756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 3e-23; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 802 - 986
Target Start/End: Original strand, 7768362 - 7768548
Alignment:
Q  802 tttttggactagatttggcacttcccattctggaaaaatcgtagtatgatctggcaaagttgtagtacgattttacgctgatgcagaaaaatagaaacat 901  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||| ||| | ||||||| | ||||||||||||| |||| |   | |||| || ||||||    
T  7768362 tttttggaccagatttggcaattcccattcgggaaaaatcgtagcatggtatggcaaaatcgtagtacgattttgcgctaaacgataaaatta-aaacat 7768460  T
Q  902 a--tttcagcttcagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcagatgaaaaacatgtatagag 986  Q
    |  ||||||| | ||||||||||||| |||| ||||||  ||||||||| ||||||  ||||||||||||||| || |||||| ||||    
T  7768461 atttttcagcgtgagatttgttccaattttttagggatgtttttactataaatataagccttgtatcagatgagaatcatgtagagag 7768548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 18099530 - 18099474
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactataatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || || |||||||||||||||||||||||||||||||    
T  18099530 cagatttgttccaaattttaagcgagacttttactataatatagaccttgtatcaga 18099474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 15780757 - 15780814
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  15780757 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgtatcaga 15780814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 912 - 975
Target Start/End: Original strand, 13893290 - 13893354
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcagatgaaaaa 975  Q
    ||||||||||||||||||| |||| |||||||||||| ||||||||| |||||||| ||||||||    
T  13893290 cagatttgttccaaattttaagggttacttttactataaatatagacattgtatcaaatgaaaaa 13893354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 912 - 966
Target Start/End: Original strand, 18162561 - 18162616
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatca 966  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||    
T  18162561 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgtatca 18162616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 912 - 966
Target Start/End: Original strand, 24177176 - 24177231
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatca 966  Q
    ||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||    
T  24177176 cagatttgttccaaattttaagggatacttttattataaatatagaccttgtatca 24177231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 912 - 974
Target Start/End: Complemental strand, 46966995 - 46966932
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcagatgaaaa 974  Q
    ||||||||||||||||||| |||| |||||||||||| |||||| || ||||||||||||||||    
T  46966995 cagatttgttccaaattttaagggttacttttactataaatataaacattgtatcagatgaaaa 46966932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 912 - 966
Target Start/End: Complemental strand, 48362030 - 48361975
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatca 966  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||    
T  48362030 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgtatca 48361975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 912 - 965
Target Start/End: Original strand, 5191550 - 5191604
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatc 965  Q
    ||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||    
T  5191550 cagatttgttccaaattttaagggaaacttttactataaatatagaccttgtatc 5191604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 913 - 974
Target Start/End: Original strand, 26762863 - 26762925
Alignment:
Q  913 agatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcagatgaaaa 974  Q
    ||||||||||||| |||| |||||| |||||||||| |||||| |||||||||||||||||||    
T  26762863 agatttgttccaattttttagggatgcttttactataaatataaaccttgtatcagatgaaaa 26762925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 1321338 - 1321395
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||| ||||||||||    
T  1321338 cagatttgttccaaattttaagcgatacttttactataaatatagactttgtatcaga 1321395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 11170301 - 11170358
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||    
T  11170301 cagatttgttccaaattttaagcgaaacttttactataaatatagaccttgtatcaga 11170358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 22114665 - 22114608
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||    
T  22114665 cagatttgttccaaattttaagcgaaacttttactataaatatagaccttgtatcaga 22114608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 26720445 - 26720502
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| ||  ||||||||||||| ||||||||||||||||||||    
T  26720445 cagatttgttccaaattttaagcaatacttttactataaatatagaccttgtatcaga 26720502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 32264403 - 32264346
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||||| |||||||| || |||||||||||||| ||||||||||||||||||||    
T  32264403 cagatttgtttcaaattttaagcgatacttttactataaatatagaccttgtatcaga 32264346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 915 - 965
Target Start/End: Complemental strand, 10191670 - 10191619
Alignment:
Q  915 atttgttccaaattttgagggatacttttactat-aatatagaccttgtatc 965  Q
    |||||||||||||||| || |||||||||||||| |||||||||||||||||    
T  10191670 atttgttccaaattttaagcgatacttttactataaatatagaccttgtatc 10191619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 912 - 965
Target Start/End: Complemental strand, 10084753 - 10084699
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatc 965  Q
    ||||||||||||||||||| || ||| |||||||||| |||||||||||||||||    
T  10084753 cagatttgttccaaattttaagcgatgcttttactataaatatagaccttgtatc 10084699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 915 - 968
Target Start/End: Complemental strand, 12268323 - 12268269
Alignment:
Q  915 atttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||||||||||| || |||||||||||||| |||||||| |||||||||||    
T  12268323 atttgttccaaattttaagcgatacttttactataaatatagaacttgtatcaga 12268269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 3859425 - 3859482
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||||| |||||||| || || ||||||||||| ||||||||||||||||||||    
T  3859425 cagatttgtttcaaattttaagcgaaacttttactataaatatagaccttgtatcaga 3859482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 5522975 - 5522918
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||||| |||||||| || || ||||||||||| ||||||||||||||||||||    
T  5522975 cagatttgtttcaaattttaagcgaaacttttactataaatatagaccttgtatcaga 5522918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 11163047 - 11163104
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || || |||||||| || ||||||||||||||||||||    
T  11163047 cagatttgttccaaattttaagcgaaacttttacgataaatatagaccttgtatcaga 11163104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 913 - 968
Target Start/End: Original strand, 23633357 - 23633414
Alignment:
Q  913 agatttgttccaaattt-tgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||||||| ||||||||||    
T  23633357 agatttgttccaattttatgagggatacttttactataaatatagactttgtatcaga 23633414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 964
Target Start/End: Original strand, 38889936 - 38889989
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtat 964  Q
    ||||||||||||||||||| || || ||||||||||| ||||||||||||||||    
T  38889936 cagatttgttccaaattttaagcgaaacttttactataaatatagaccttgtat 38889989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 914 - 976
Target Start/End: Original strand, 13419774 - 13419838
Alignment:
Q  914 gatttgttccaaattt-tgagggatacttttactat-aatatagaccttgtatcagatgaaaaac 976  Q
    ||||||||| || ||| ||||||||||||||||||| |||||||||||| ||||||||| |||||    
T  13419774 gatttgttctaattttatgagggatacttttactataaatatagaccttatatcagatgtaaaac 13419838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 918 - 968
Target Start/End: Original strand, 53597143 - 53597195
Alignment:
Q  918 tgttccaaattt-tgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||    
T  53597143 tgttccaattttatgagggatacttttactataaatatagaccttgtatcaga 53597195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 927 - 973
Target Start/End: Complemental strand, 11008020 - 11007973
Alignment:
Q  927 ttttgagggatacttttactataa-tatagaccttgtatcagatgaaa 973  Q
    |||||||| ||||||||||||||| |||| ||||||||||||||||||    
T  11008020 ttttgaggaatacttttactataaatataaaccttgtatcagatgaaa 11007973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 966
Target Start/End: Complemental strand, 18097261 - 18097206
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatca 966  Q
    |||||||||| |||||||| || || ||||||||||| ||||||||||||||||||    
T  18097261 cagatttgtttcaaattttaagcgagacttttactataaatatagaccttgtatca 18097206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 912 - 966
Target Start/End: Original strand, 45882836 - 45882891
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatca 966  Q
    ||||||||||  ||||||| || |||||||||||||| ||||||||||||||||||    
T  45882836 cagatttgttgaaaattttaagcgatacttttactataaatatagaccttgtatca 45882891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Original strand, 455802 - 455856
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  455802 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 455856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Original strand, 458179 - 458233
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  458179 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 458233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Original strand, 746650 - 746704
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  746650 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 746704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Complemental strand, 4104257 - 4104203
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  4104257 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 4104203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Complemental strand, 10621900 - 10621846
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  10621900 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 10621846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 914 - 975
Target Start/End: Original strand, 16996705 - 16996767
Alignment:
Q  914 gatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcagatgaaaaa 975  Q
    ||||||||||||||||| ||||||  ||||| ||| |||||| |||||||||||||| |||||    
T  16996705 gatttgttccaaatttttagggatggttttaatataaatataaaccttgtatcagataaaaaa 16996767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 10956387 - 10956330
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactataa-tatagaccttgtatcaga 968  Q
    ||||||||||||||||||| ||  ||  ||||||||||| ||||||||||||||||||    
T  10956387 cagatttgttccaaattttaagcaatttttttactataaatatagaccttgtatcaga 10956330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 10958683 - 10958626
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactataa-tatagaccttgtatcaga 968  Q
    ||||||||||||||||||| ||  ||  ||||||||||| ||||||||||||||||||    
T  10958683 cagatttgttccaaattttaagcaatttttttactataaatatagaccttgtatcaga 10958626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 24979604 - 24979661
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| ||  ||||||| ||||| |||||| |||||||||||||    
T  24979604 cagatttgttccaaattttaagtaatactttcactataaatatataccttgtatcaga 24979661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 916 - 968
Target Start/End: Complemental strand, 28761784 - 28761731
Alignment:
Q  916 tttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||||| || ||||||||||||||||||| ||||||||| ||| ||||||    
T  28761784 tttgttccaatttatgagggatacttttactataaatatagactttgcatcaga 28761731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 915 - 966
Target Start/End: Original strand, 42990181 - 42990234
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatca 966  Q
    ||||||||||||||| ||||  ||||||||||||||| ||||||||||||||||    
T  42990181 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatca 42990234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 7e-18; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 788 - 966
Target Start/End: Complemental strand, 12186555 - 12186376
Alignment:
Q  788 aaatagtagcacgatttttggactagatttggcacttcccattctggaaaaatcgtagtatgatctggcaaagttgtagtacgattttacgctgatgcag 887  Q
    |||| |||| ||||||||||||  ||||||||||||||| ||| ||||||||||| | || ||| ||| ||| | ||||||||||||||| ||||||||     
T  12186555 aaatcgtagtacgatttttggatcagatttggcacttcc-attttggaaaaatcgaaatacgatttggaaaa-tcgtagtacgattttacactgatgcat 12186458  T
Q  888 aaaaatagaaacata--tttcagcttcagatttgttccaaattttgaggga-tacttttactat-aatatagaccttgtatca 966  Q
    ||||||| |||  ||  ||||||| | ||||||||||||| |||| || || |||||||||||| |||||| |||||||||||    
T  12186457 aaaaata-aaatgtacttttcagcgtgagatttgttccaattttttagcgattacttttactataaatataaaccttgtatca 12186376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 8995431 - 8995488
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||    
T  8995431 cagatttgttccaaattttaagcgatacttttactataaatatagatcttgtatcaga 8995488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 9019878 - 9019935
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||    
T  9019878 cagatttgttccaaattttaagcgatacttttactataaatatagatcttgtatcaga 9019935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 916 - 968
Target Start/End: Complemental strand, 15530480 - 15530427
Alignment:
Q  916 tttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  15530480 tttgttccaaattttaagcgatacttttactataaatatagaccttgtatcaga 15530427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 15533043 - 15532986
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| ||  ||||||||||||| ||||||||||||||||||||    
T  15533043 cagatttgttccaaattttaagttatacttttactataaatatagaccttgtatcaga 15532986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 19227770 - 19227713
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||    
T  19227770 cagatttgttccaaattttaagggaaacttttactataaatatagatcttgtatcaga 19227713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 913 - 964
Target Start/End: Complemental strand, 14507536 - 14507484
Alignment:
Q  913 agatttgttccaaattttgagggatacttttactat-aatatagaccttgtat 964  Q
    |||||||||||||||||| || |||||||||||||| ||||||||||||||||    
T  14507536 agatttgttccaaattttaagcgatacttttactataaatatagaccttgtat 14507484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 912 - 966
Target Start/End: Original strand, 32279949 - 32280004
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactata-atatagaccttgtatca 966  Q
    ||||||||||||||||||| || ||||||||| ||||| |||||||||||||||||    
T  32279949 cagatttgttccaaattttaagcgatacttttcctatatatatagaccttgtatca 32280004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 913 - 970
Target Start/End: Complemental strand, 12937559 - 12937499
Alignment:
Q  913 agatttgttccaaattttgagggatacttttactata---atatagaccttgtatcagatg 970  Q
    |||||| ||||||||||| ||||||||||||||||||   |||||||| ||||||||||||    
T  12937559 agatttattccaaatttttagggatacttttactataaatatatagacattgtatcagatg 12937499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 1072239 - 1072182
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| ||  ||||||||||||| ||||||||| ||||||||||    
T  1072239 cagatttgttccaaattttaagcaatacttttactataaatatagacattgtatcaga 1072182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 916 - 968
Target Start/End: Original strand, 15366992 - 15367045
Alignment:
Q  916 tttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||||| || ||||||||||||||||||| ||||||||| ||||||||||    
T  15366992 tttgttccaatttatgagggatacttttactataaatatagacattgtatcaga 15367045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 15541502 - 15541445
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| ||  | ||||||||||| ||||||||||||||||||||    
T  15541502 cagatttgttccaaattttaagttacacttttactataaatatagaccttgtatcaga 15541445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 913 - 973
Target Start/End: Original strand, 19696394 - 19696455
Alignment:
Q  913 agatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcagatgaaa 973  Q
    ||||||||||||| |||||| |||| |||||||||| ||||||||||||||||  |||||||    
T  19696394 agatttgttccaatttttgaaggattcttttactataaatatagaccttgtatatgatgaaa 19696455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 30729190 - 30729133
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || | |||||||||||| |||||||| |||||||||||    
T  30729190 cagatttgttccaaattttaagcggtacttttactataaatatagatcttgtatcaga 30729133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 916 - 967
Target Start/End: Original strand, 15346347 - 15346399
Alignment:
Q  916 tttgttccaaattttgagggatacttttactat-aatatagaccttgtatcag 967  Q
    |||||||||| || ||||||||||||||||||| ||||||||| |||||||||    
T  15346347 tttgttccaatttatgagggatacttttactataaatatagacattgtatcag 15346399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 911 - 965
Target Start/End: Complemental strand, 16455787 - 16455732
Alignment:
Q  911 tcagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatc 965  Q
    ||||||||||||||| |||| |||||||| |||||||| |||||| ||||||||||    
T  16455787 tcagatttgttccaatttttcagggatacctttactataaatatataccttgtatc 16455732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 913 - 966
Target Start/End: Complemental strand, 12911812 - 12911756
Alignment:
Q  913 agatttgttccaaattttgagggatacttttactata---atatagaccttgtatca 966  Q
    |||||| ||||||||||| ||||||||||||||||||   |||||||| ||||||||    
T  12911812 agatttattccaaatttttagggatacttttactataaatatatagacattgtatca 12911756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 914 - 975
Target Start/End: Complemental strand, 24543038 - 24542976
Alignment:
Q  914 gatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcagatgaaaaa 975  Q
    ||||||||| |||||||||||||| ||| |||||| ||||||||| |||||| |||| |||||    
T  24543038 gatttgttcaaaattttgagggatgcttgtactataaatatagacgttgtattagataaaaaa 24542976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 754 - 831
Target Start/End: Complemental strand, 24543178 - 24543101
Alignment:
Q  754 aaagtgactcaaaattgaagtttgagaatctgcc-aaatagtagcacgatttttggactagatttggcacttcccattc 831  Q
    |||||||||||||||||||| ||| ||||||||| |||| ||||| ||| |||||||| ||| ||| |||||| |||||    
T  24543178 aaagtgactcaaaattgaaggttgggaatctgccaaaatcgtagcccga-ttttggaccagaattgacacttctcattc 24543101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Complemental strand, 30034967 - 30034913
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  30034967 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 30034913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 11983391 - 11983334
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactataa-tatagaccttgtatcaga 968  Q
    |||||||||| |||||||| |  || ||||||||||||| ||||||||||||||||||    
T  11983391 cagatttgtttcaaattttaaacgaaacttttactataaatatagaccttgtatcaga 11983334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 915 - 966
Target Start/End: Complemental strand, 12195875 - 12195822
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatca 966  Q
    ||||||||||||||| ||||  ||||||||||||||| ||||||||||||||||    
T  12195875 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatca 12195822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 915 - 966
Target Start/End: Complemental strand, 28038065 - 28038012
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactat-aatatagaccttgtatca 966  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||||| ||||||||    
T  28038065 atttgttccaattttatgagggatacttttactataaatatagacattgtatca 28038012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 1e-16; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 914 - 970
Target Start/End: Original strand, 29748260 - 29748317
Alignment:
Q  914 gatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcagatg 970  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  29748260 gatttgttccaaattttgagggatgcttttactataaatatagaccttgtatcagatg 29748317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 2818698 - 2818641
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  2818698 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgtatcaga 2818641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 4236546 - 4236603
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  4236546 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgtatcaga 4236603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 21947944 - 21948001
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  21947944 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgtatcaga 21948001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 25921835 - 25921778
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  25921835 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgtatcaga 25921778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 913 - 970
Target Start/End: Complemental strand, 2144954 - 2144895
Alignment:
Q  913 agatttgttccaaat-tttgagggatacttttactat-aatatagaccttgtatcagatg 970  Q
    ||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||    
T  2144954 agatttgttccaattatttgagggatacttttactataaatatagaccttgtatcagatg 2144895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 31466340 - 31466283
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||    
T  31466340 cagatttgttccaaattttaagcgacacttttactataaatatagaccttgtatcaga 31466283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 38882022 - 38882079
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||    
T  38882022 cagatttgttccaaattttaagcgaaacttttactataaatatagaccttgtatcaga 38882079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 913 - 965
Target Start/End: Original strand, 16776075 - 16776129
Alignment:
Q  913 agatttgttccaaattttgagggatacttttactat--aatatagaccttgtatc 965  Q
    |||||||||||||||||| || ||||||||||||||  |||||||||||||||||    
T  16776075 agatttgttccaaattttaagcgatacttttactataaaatatagaccttgtatc 16776129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 12556285 - 12556228
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||||| |||| ||| || |||||||||||||| ||||||||||||||||||||    
T  12556285 cagatttgtttcaaaatttaagcgatacttttactataaatatagaccttgtatcaga 12556228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Original strand, 10586758 - 10586812
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  10586758 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 10586812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Original strand, 15552154 - 15552208
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  15552154 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 15552208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Original strand, 25803935 - 25803989
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  25803935 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 25803989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Original strand, 27910364 - 27910418
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  27910364 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 27910418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Original strand, 27912449 - 27912503
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  27912449 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 27912503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 2174836 - 2174893
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || ||| |||||||||| |||| || ||||||||||||    
T  2174836 cagatttgttccaaattttaagcgatgcttttactataaatacaggccttgtatcaga 2174893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 915 - 966
Target Start/End: Complemental strand, 3373401 - 3373348
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatca 966  Q
    ||||||||||||||| ||||  ||||||||||||||| ||||||||||||||||    
T  3373401 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatca 3373348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 915 - 966
Target Start/End: Original strand, 18468926 - 18468979
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatca 966  Q
    ||||||||||||||| ||||  ||||||||||||||| ||||||||||||||||    
T  18468926 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatca 18468979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 20507824 - 20507767
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||  ||| || |||||||||||||| |||||||| |||||||||||    
T  20507824 cagatttgttccaagatttaagcgatacttttactataaatatagatcttgtatcaga 20507767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 916 - 968
Target Start/End: Original strand, 36208501 - 36208554
Alignment:
Q  916 tttgttccaaattttgagggatacttttactataa-tatagaccttgtatcaga 968  Q
    |||||||||| ||  ||||||| |||||||||||| ||||||||||||||||||    
T  36208501 tttgttccaatttgcgagggatgcttttactataaatatagaccttgtatcaga 36208554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 36402689 - 36402633
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||| ||||||| || |||||||||||||| |||||||||||| |||||||    
T  36402689 cagatttgttc-aaattttaagcgatacttttactataaatatagaccttatatcaga 36402633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 912 - 964
Target Start/End: Original strand, 39798005 - 39798058
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtat 964  Q
    ||||||||||||||||||| ||  | ||||||||||| ||||||||||||||||    
T  39798005 cagatttgttccaaattttaagcaaaacttttactataaatatagaccttgtat 39798058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 4e-16; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 914 - 993
Target Start/End: Original strand, 49958963 - 49959043
Alignment:
Q  914 gatttgttccaaattttgagggatacttttactataa-tatagaccttgtatcagatgaaaaacatgtatagagtagaaaa 993  Q
    |||||||||||||||||| ||||| ||||| |||||| |||||||||||||||||||||||||  |||| ||||| |||||    
T  49958963 gatttgttccaaattttgtgggatgcttttgctataaatatagaccttgtatcagatgaaaaaagtgtagagagtggaaaa 49959043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 13214998 - 13215055
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  13214998 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgtatcaga 13215055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 913 - 973
Target Start/End: Complemental strand, 26613603 - 26613542
Alignment:
Q  913 agatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcagatgaaa 973  Q
    ||||||||||||| ||||||||||| ||||| |||| |||||||||||||||||||||||||    
T  26613603 agatttgttccaatttttgagggattcttttgctataaatatagaccttgtatcagatgaaa 26613542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 28207430 - 28207373
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  28207430 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgtatcaga 28207373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 28840595 - 28840652
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  28840595 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgtatcaga 28840652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 41646837 - 41646894
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  41646837 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgtatcaga 41646894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 911 - 970
Target Start/End: Complemental strand, 8347635 - 8347575
Alignment:
Q  911 tcagatttgttccaaattt-tgagggatacttttactataatatagaccttgtatcagatg 970  Q
    ||||||||||||||| ||| |||||| |||||||||||||| |||||||||||||||||||    
T  8347635 tcagatttgttccaattttatgaggggtacttttactataaaatagaccttgtatcagatg 8347575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 912 - 966
Target Start/End: Original strand, 15823463 - 15823518
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatca 966  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||    
T  15823463 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgtatca 15823518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 13761754 - 13761811
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||    
T  13761754 cagatttgttccaaattttaagcgaaacttttactataaatatagaccttgtatcaga 13761811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 30790758 - 30790701
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||| ||||||||||    
T  30790758 cagatttgttccaaattttaagcgatacttttactataaatatagacattgtatcaga 30790701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 38925842 - 38925785
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  38925842 cagatttattccaaattttaagcgatacttttactataaatatagaccttgtatcaga 38925785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 47451565 - 47451622
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||||||||||| || || |||||||||||||| ||||||||||||||||||||    
T  47451565 cagatttgttccaaatattaagcgatacttttactataaatatagaccttgtatcaga 47451622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 51749956 - 51750013
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||    
T  51749956 cagatttgttccaaattttaagcgaaacttttactataaatatagaccttgtatcaga 51750013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 51752282 - 51752339
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||    
T  51752282 cagatttgttccaaattttaagcgaaacttttactataaatatagaccttgtatcaga 51752339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 913 - 966
Target Start/End: Original strand, 27916415 - 27916469
Alignment:
Q  913 agatttgttccaaattttgagggatacttttactat-aatatagaccttgtatca 966  Q
    ||||||||||||| ||| |||||||||||||||||| ||||||||| ||||||||    
T  27916415 agatttgttccaattttggagggatacttttactataaatatagacattgtatca 27916469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 915 - 968
Target Start/End: Original strand, 28842413 - 28842467
Alignment:
Q  915 atttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||||||||||| || |||||||||||||| |||||| |||||||||||||    
T  28842413 atttgttccaaattttaagcgatacttttactataaatataaaccttgtatcaga 28842467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 927 - 968
Target Start/End: Original strand, 43104091 - 43104133
Alignment:
Q  927 ttttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  43104091 ttttgagggatacttttactataaatatagaccttgtatcaga 43104133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 915 - 974
Target Start/End: Original strand, 46782972 - 46783035
Alignment:
Q  915 atttgttccaaattttgagggatacttttact----ataatatagaccttgtatcagatgaaaa 974  Q
    |||||||||||||||| |||| ||||||||||    |||||||| |||||||||||||||||||    
T  46782972 atttgttccaaattttaagggttacttttactataaataatataaaccttgtatcagatgaaaa 46783035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 915 - 967
Target Start/End: Complemental strand, 3579979 - 3579926
Alignment:
Q  915 atttgttccaaattttgagggatacttttactat-aatatagaccttgtatcag 967  Q
    |||||||||||||||| || |||||||||||| | |||||||||||||||||||    
T  3579979 atttgttccaaattttaagcgatacttttactttaaatatagaccttgtatcag 3579926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 6822932 - 6822989
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttacta-taatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || || |||||||||| | |||||||||||||||||||    
T  6822932 cagatttgttccaaattttaagcgaaacttttactatttatatagaccttgtatcaga 6822989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 6823801 - 6823858
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttacta-taatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || || |||||||||| | |||||||||||||||||||    
T  6823801 cagatttgttccaaattttaagcgaaacttttactatttatatagaccttgtatcaga 6823858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 10400192 - 10400135
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || || |||||| |||| ||||||||||||||||||||    
T  10400192 cagatttgttccaaattttaagcgaaactttttctataaatatagaccttgtatcaga 10400135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 39462436 - 39462493
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| ||  ||||||| ||||| ||||||||||||||||||||    
T  39462436 cagatttgttccaaattttaagtaatactttcactataaatatagaccttgtatcaga 39462493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 913 - 968
Target Start/End: Original strand, 42922151 - 42922208
Alignment:
Q  913 agatttgttccaaattt-tgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||  ||||||||||    
T  42922151 agatttgttccaaatttatgagggatacttttactataaatatagattttgtatcaga 42922208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 916 - 975
Target Start/End: Complemental strand, 26979885 - 26979825
Alignment:
Q  916 tttgttccaaattttgagggatacttttactataa-tatagaccttgtatcagatgaaaaa 975  Q
    |||||||||| |||| |||||| |||||| ||||| || ||||||||||||||||||||||    
T  26979885 tttgttccaattttttagggatgcttttattataaataaagaccttgtatcagatgaaaaa 26979825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 915 - 968
Target Start/End: Original strand, 24325575 - 24325630
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcaga 968  Q
    ||||||||||||||| ||||  ||||||||||||||| ||||||||||||||||||    
T  24325575 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcaga 24325630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Complemental strand, 2510690 - 2510636
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  2510690 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 2510636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Complemental strand, 9459785 - 9459731
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  9459785 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 9459731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Complemental strand, 9463612 - 9463558
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  9463612 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 9463558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 968
Target Start/End: Original strand, 20302379 - 20302433
Alignment:
Q  915 atttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||||||||||| || || ||||||| ||| ||||||||||||||||||||    
T  20302379 atttgttccaaattttaagtgaaacttttattataaatatagaccttgtatcaga 20302433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Complemental strand, 31735887 - 31735833
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  31735887 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 31735833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Complemental strand, 46432090 - 46432036
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  46432090 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 46432036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Original strand, 47906183 - 47906237
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  47906183 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 47906237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 49495564 - 49495506
Alignment:
Q  912 cagatttgttccaaattt-tgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||| || ||| ||||||||||||||||||| ||||||||| ||||||||||    
T  49495564 cagatttgttcgaattttatgagggatacttttactataaatatagactttgtatcaga 49495506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 912 - 950
Target Start/End: Original strand, 49687457 - 49687495
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactataa 950  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  49687457 cagatttgttccaaattttaagcgatacttttactataa 49687495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 919 - 970
Target Start/End: Complemental strand, 12302868 - 12302815
Alignment:
Q  919 gttccaaattttgagggat-acttttactataa-tatagaccttgtatcagatg 970  Q
    ||||||| || |||||||| ||||||||||||| ||||||||||||||||||||    
T  12302868 gttccaatttatgagggattacttttactataaatatagaccttgtatcagatg 12302815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 913 - 973
Target Start/End: Complemental strand, 30738989 - 30738928
Alignment:
Q  913 agatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcagatgaaa 973  Q
    |||||| |||||| |||||||| || |||||||||| || |||| |||||||||||||||||    
T  30738989 agatttattccaatttttgaggcattcttttactataaacatagtccttgtatcagatgaaa 30738928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 754 - 859
Target Start/End: Complemental strand, 10020 - 9914
Alignment:
Q  754 aaagtgactcaaaattgaagtttgagaatctgccaaa-tagtagcacgatttttggactagatttggcacttcccattctggaaaaatcgtagtatgatc 852  Q
    ||||||| |||||||||||||||| |||| ||  ||| | |||||||||||||| ||| | |||||||| ||||||||| | |||||||||||||  |||    
T  10020 aaagtgaatcaaaattgaagtttgggaatttgttaaaatcgtagcacgattttttgaccaaatttggcagttcccattcggaaaaaatcgtagtacaatc 9921  T
Q  853 tggcaaa 859  Q
    |||||||    
T  9920 tggcaaa 9914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 14945 - 15002
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  14945 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgtatcaga 15002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 35556 - 35613
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  35556 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgtatcaga 35613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 27306591 - 27306534
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  27306591 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgtatcaga 27306534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 912 - 968
Target Start/End: Complemental strand, 40837104 - 40837047
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  40837104 cagatttgttccaaattttaagggaaacttttactataaatatagaccttgtatcaga 40837047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 44491 - 44548
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||| ||||||||| || |||||||||||||| ||||||||||||||||||||    
T  44491 cagatttgtaccaaattttaagcgatacttttactataaatatagaccttgtatcaga 44548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 753 - 845
Target Start/End: Original strand, 11084225 - 11084318
Alignment:
Q  753 aaaagtgactcaaaattgaagtttgagaatctgcc-aaatagtagcacgatttttggactagatttggcacttcccattctggaaaaatcgtag 845  Q
    |||| ||||||||||| |||||||| ||||||||| |||| ||| ||||||||||||||||| ||| | ||||   |||| |||||||||||||    
T  11084225 aaaattgactcaaaatggaagtttgggaatctgccaaaatcgtaccacgatttttggactagtttttggacttttgattcgggaaaaatcgtag 11084318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 22392400 - 22392457
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||| | || |||||||||||||| ||||||||||||||||||||    
T  22392400 cagatttgttccaaattgtaagcgatacttttactataaatatagaccttgtatcaga 22392457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 912 - 962
Target Start/End: Original strand, 26804500 - 26804551
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgt 962  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||||||||    
T  26804500 cagatttgttccaaattttaagcgatacttttactataaatatagaccttgt 26804551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 964
Target Start/End: Complemental strand, 1049657 - 1049604
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtat 964  Q
    ||||||||||||||||||| || || ||||||||||| ||||||||||||||||    
T  1049657 cagatttgttccaaattttaagcgaaacttttactataaatatagaccttgtat 1049604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 3878498 - 3878559
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttacta-----taatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || |||||||||||||     |||||||||||||||||||||    
T  3878498 cagatttgttccaaattttaagcgatacttttactataaattaatatagaccttgtatcaga 3878559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 913 - 968
Target Start/End: Original strand, 7188470 - 7188527
Alignment:
Q  913 agatttgttccaaattt-tgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||||||| ||||||||||    
T  7188470 agatttgttccaattttatgagggatacttttactataaatatagactttgtatcaga 7188527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 964
Target Start/End: Original strand, 45366473 - 45366526
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtat 964  Q
    ||||||||||||||||||| |||| |||||||||||| |||||| |||||||||    
T  45366473 cagatttgttccaaattttaagggttacttttactataaatataaaccttgtat 45366526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 919 - 970
Target Start/End: Original strand, 9680748 - 9680800
Alignment:
Q  919 gttccaaattttgagggatacttttactataa-tatagaccttgtatcagatg 970  Q
    ||||||| || |||||||| |||||||||||| ||||||||||||||||||||    
T  9680748 gttccaatttatgagggatgcttttactataaatatagaccttgtatcagatg 9680800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 917 - 968
Target Start/End: Original strand, 18567545 - 18567597
Alignment:
Q  917 ttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||||||||| || |||||||||||||| |||||||| |||||||||||    
T  18567545 ttgttccaaattttaagcgatacttttactataaatatagatcttgtatcaga 18567597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 913 - 968
Target Start/End: Original strand, 25542459 - 25542515
Alignment:
Q  913 agatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||| ||||||||||| || || ||||||||||| ||||||||||||||||||||    
T  25542459 agatttattccaaattttaagcgaaacttttactataaatatagaccttgtatcaga 25542515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 917 - 968
Target Start/End: Complemental strand, 31435404 - 31435352
Alignment:
Q  917 ttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||||||||| || |||||||||||||| |||||||| |||||||||||    
T  31435404 ttgttccaaattttaagcgatacttttactataaatatagatcttgtatcaga 31435352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 913 - 970
Target Start/End: Original strand, 6048599 - 6048658
Alignment:
Q  913 agatttgttccaaat-tttgagggatacttttactat-aatatagaccttgtatcagatg 970  Q
    ||||||||||||| | |||||||||| |||||||||| |||||||||||||||| |||||    
T  6048599 agatttgttccaattatttgagggatgcttttactataaatatagaccttgtattagatg 6048658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 913 - 975
Target Start/End: Original strand, 42006493 - 42006556
Alignment:
Q  913 agatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcagatgaaaaa 975  Q
    |||||||||||| ||||| |||| |||||||||||| |||||| ||| ||||| ||||||||||    
T  42006493 agatttgttccatattttaagggttacttttactataaatataaaccgtgtataagatgaaaaa 42006556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Original strand, 3035646 - 3035700
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  3035646 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 3035700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Complemental strand, 7349639 - 7349585
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  7349639 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 7349585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Original strand, 11757153 - 11757207
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  11757153 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 11757207  T

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Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Original strand, 18345466 - 18345520
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  18345466 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 18345520  T

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Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Original strand, 28485491 - 28485545
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  28485491 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 28485545  T

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Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Original strand, 38393911 - 38393965
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  38393911 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 38393965  T

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Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Original strand, 38396215 - 38396269
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  38396215 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 38396269  T

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Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 915 - 967
Target Start/End: Complemental strand, 43253884 - 43253830
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatcag 967  Q
    ||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||    
T  43253884 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatcag 43253830  T

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Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 915 - 966
Target Start/End: Original strand, 1606399 - 1606452
Alignment:
Q  915 atttgttccaaattt-tgagggatacttttactataa-tatagaccttgtatca 966  Q
    ||||||||||||||| ||||  ||||||||||||||| ||||||||||||||||    
T  1606399 atttgttccaaatttatgagttatacttttactataaatatagaccttgtatca 1606452  T

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Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 914 - 974
Target Start/End: Complemental strand, 6067552 - 6067491
Alignment:
Q  914 gatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcagatgaaaa 974  Q
    |||||||||||| |||| |||||| |||||||||| |||||| | | |||||||||||||||    
T  6067552 gatttgttccaattttttagggatgcttttactataaatataaatcctgtatcagatgaaaa 6067491  T

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Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 913 - 968
Target Start/End: Complemental strand, 20091903 - 20091846
Alignment:
Q  913 agatttgttccaaattt-tgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||||||| || |||||||    
T  20091903 agatttgttccaattttatgagggatacttttactataaatatagactttttatcaga 20091846  T

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Target: scaffold0025 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 887 - 966
Target Start/End: Complemental strand, 73414 - 73334
Alignment:
Q  887 gaaaaatagaaacatatttcagcttcagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatca 966  Q
    |||||| ||||||||||||  | | ||||||||||||||||||| || |||||||||||||| |||||||||| |||||||    
T  73414 gaaaaacagaaacatattttgggtgcagatttgttccaaattttaagagatacttttactataaatatagaccgtgtatca 73334  T

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Target: scaffold0025; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 887 - 968
Target Start/End: Complemental strand, 69682 - 69600
Alignment:
Q  887 gaaaaatagaaacatatttcagcttcagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||| ||||||||||||  | | ||||||||||||||||||| || ||||||||||| || |||||||||||| |||||||    
T  69682 gaaaaacagaaacatattttgggtgcagatttgttccaaattttaagcgatacttttacaataaatatagaccttatatcaga 69600  T

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Target: scaffold0339 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 3923 - 3980
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    |||||||||| |||||||| ||  ||||||||||||| ||||||||||||||||||||    
T  3923 cagatttgtttcaaattttaagcaatacttttactataaatatagaccttgtatcaga 3980  T

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Target: scaffold0250 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 912 - 968
Target Start/End: Original strand, 2806 - 2863
Alignment:
Q  912 cagatttgttccaaattttgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||||| || || ||||||||||| |||||||| |||||||||||    
T  2806 cagatttgttccaaattttaagcgaaacttttactataaatatagaacttgtatcaga 2863  T

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Target: scaffold0224 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 913 - 968
Target Start/End: Complemental strand, 16180 - 16123
Alignment:
Q  913 agatttgttccaaattt-tgagggatacttttactat-aatatagaccttgtatcaga 968  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||  ||||||||||    
T  16180 agatttgttccaaatttatgagggatacttttactataaatatagattttgtatcaga 16123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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