View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5686-Insertion-4 (Length: 971)
Name: NF5686-Insertion-4
Description: NF5686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5686-Insertion-4 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 924; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 924; E-Value: 0
Query Start/End: Original strand, 8 - 971
Target Start/End: Original strand, 228882 - 229845
Alignment:
| Q |
8 |
actgtaagggtaaacaatcttgtctattagctctcaaggacactttcacaaggtatgcactagcatcagggcagatgaataatgcaaacaagtcaaccat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
228882 |
actgtaagggtaaacaatcttgtctattagctctcaaggacactttcacaaggtatgcactagcatcagggcagatgaataatgtaaacaagtcaaccat |
228981 |
T |
|
| Q |
108 |
ttcaggttccattccaccatctagattacatcatcttgcatagttaattggcttcagcattggccagttaccattctcttatttaggagttcccattttc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
228982 |
ttcaggttccattccaccatctagattacatcatcttgcatagttaattggcttcagcattggccagttaccattctcttatttaggagttcccattttc |
229081 |
T |
|
| Q |
208 |
aaagggaaacctaaatcattgtatttccaacctttagcagacaagatcaaactaaagcttagtgcttggaaagcctcattactatccatttatggtagaa |
307 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
229082 |
aaagggaaacctaaatcattgcatttccaacctttagcagacaagatcaaactaaagcttagtgcttggaaagcctcattactgtccatttatggtagaa |
229181 |
T |
|
| Q |
308 |
ttcagctagtaaagtcagtgattcaaggaatgttgatacatagtataactgtttattcttggcccatttcctcattaaaggatctggaaagatgtataaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
229182 |
ttcagctagtaaagtcagtgattcaaggaatgttgatacatagtataactgtttattcttggcccatttcttcattaaaggatctggaaagatgtataaa |
229281 |
T |
|
| Q |
408 |
aaatttcatttggagtgaggatatcactcaaaggaagcttgttactgtggcttggaaaatgctttatagaccatttgatgaaggaggcttaggtctgaaa |
507 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
229282 |
aaatttcatctggagtgaggatatcactcaaaggaagcttgttactatggcttggaaaatgctttatagaccatttgatgaaggaggcttaggtctgaaa |
229381 |
T |
|
| Q |
508 |
tctttaatcaaaattaatgaagcctcaaacctcaagctttgttggaatttgcttaattctgatgaaatatgggcagtcatcctaaaaaatagagttctca |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
229382 |
tctttaatcaaaattaatgaagcctcaaacctcaagctttgttggaatttgcttaattctgatgaaatgtgggcagtcatcctaaaaaatagagttctca |
229481 |
T |
|
| Q |
608 |
gatataggagacatattgttcatcatgtttcttcctcaatttggagcaatgtcaaaagtgaatataccacatttcatgagaattccacatgtttgttagg |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
229482 |
gatataggagacatattgttcatcatgtttcttcctcaatttggagcaatgtcaaaagtgaatataccacatttcatgagaattccacatgtttgttagg |
229581 |
T |
|
| Q |
708 |
aaatggggaaaatatcaagttctggactaatagttggtgtgggcctccccctttgtgaggtgtttcatattcgccctaacattcacaactctcttacttc |
807 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
229582 |
aaatggggaaaatatcaagttctggactgatagttggtgtgggcctccccctttgtgaggtgtttcatattcgccctaacattcacaactctcttacttc |
229681 |
T |
|
| Q |
808 |
tagagtctgtgattatctgaatgattttcaatggataataccttggcaccttcaagtacaatttcctaatctcacacaaattgttgaaaacattgtgatt |
907 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
229682 |
tagagtctatgattatctgaatgattttcaatggataataccttggcagcttcaagtacaatttcctaatctcacacaaattgttgaaaacattgtgatt |
229781 |
T |
|
| Q |
908 |
cctttggagcataagcaagttaagctgatgtggacaaactctaaatctggtgatgtttcactca |
971 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
229782 |
cctttggagcataagcaagttaagctgatgtggacaaactctaaatctggtgatgtttcactca |
229845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 43580323 - 43580381
Alignment:
| Q |
196 |
gttcccattttcaaagggaaacctaaatcattgtatttccaacctttagcagacaagat |
254 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||| | ||| |||| |||||||| |
|
|
| T |
43580323 |
gttcccattttcaaagggaaacctaaagctttgtattttctacccatagctgacaagat |
43580381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 50560842 - 50560805
Alignment:
| Q |
185 |
cttatttaggagttcccattttcaaagggaaacctaaa |
222 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
50560842 |
cttatttaggagtttctattttcaaagggaaacctaaa |
50560805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University