View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5686-Insertion-5 (Length: 226)
Name: NF5686-Insertion-5
Description: NF5686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5686-Insertion-5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 34375573 - 34375779
Alignment:
| Q |
17 |
ataaatttgatgcaaataatttcaatttcgtaaatctatattagactccaatttgtacaaatacacaaacagagctttaaaactctatcaatgaacttct |
116 |
Q |
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| T |
34375573 |
ataaattttatgcaaataatttcaatttcgtaaatctatattagactccaatttgtccaaatacacaaacagagctttaaaactctatcaatgaacttct |
34375672 |
T |
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| Q |
117 |
aaaaaccacatattacaccatcagattttcatttgttaaattgagaaccatgccatttgaattaatgagactcatttaatagattctctacacactccct |
216 |
Q |
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| T |
34375673 |
aa---ccacatattacaccatcagattttcatttgttaaatttagaaccatgccatttgaattaatgagactcatttaatagattctctacacactccct |
34375769 |
T |
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| Q |
217 |
ttagccttgt |
226 |
Q |
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| T |
34375770 |
ttagccttgt |
34375779 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 33982434 - 33982500
Alignment:
| Q |
97 |
aactctatcaatgaacttctaaaaaccac-----atattacaccatcagattttcatttgttaaatt |
158 |
Q |
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| T |
33982434 |
aactctatcaatgaacttctaagaaacacatattatattacaccatcaaatattcatttgttaaatt |
33982500 |
T |
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