View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5686-Insertion-6 (Length: 189)
Name: NF5686-Insertion-6
Description: NF5686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5686-Insertion-6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 8 - 189
Target Start/End: Original strand, 26418045 - 26418229
Alignment:
| Q |
8 |
aattatgtctagttattacgttaaaaaagcgtatacgcagag--tcaagaaaatttcg-agaaaaggttttcacagttataatttgcagcattgctaaac |
104 |
Q |
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| T |
26418045 |
aattatgtcttgttgatacgttaaaaaagcatatgcgcatctcttcaagaaaatttcggagaaaaggttttcacagttataatttgcagcattgctaaac |
26418144 |
T |
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| Q |
105 |
acaacgaaggaattacagcgaaagcatcccgatgtaaaaaccaaccaattaaaaattgcttccaaccaaaattcacgggaagtct |
189 |
Q |
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| T |
26418145 |
acaaccaaggaattatatcgaaagcatcccgatgtaaaaaccaaccaattaaaaattgcttccagccaaaattcacgggaagtct |
26418229 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 2346912 - 2346981
Alignment:
| Q |
91 |
cagcattgctaaacacaacgaaggaa-ttacagcgaaagcatcccgatgtaaaaaccaaccaattaaaaa |
159 |
Q |
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| T |
2346912 |
cagcattgctaaacacagcgaagggtgttatagcgaaatcatcccgacataaaaaccaaccaattaaaaa |
2346981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 30856309 - 30856233
Alignment:
| Q |
91 |
cagcattgctaaacacaacgaaggaa-ttacagcgaaagcatcccgatgtaaaaaccaaccaattaaaaattgcttc |
166 |
Q |
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| T |
30856309 |
cagcattgctaaacatagcgaaggaaattatagcgaaagtatcctggaataaaaatcaaccaattaaaaattgcttc |
30856233 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 40848454 - 40848384
Alignment:
| Q |
94 |
cattgctaaacacaacgaagg-aattacagcgaaagcatcccgatgtaaaaaccaaccaattaaaaattgc |
163 |
Q |
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| T |
40848454 |
cattgctaaacacaacgaaggaaattataacgaaagcatcgtgaactgtaaaccaaccaattaaaaattgc |
40848384 |
T |
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