View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5686_high_1 (Length: 409)
Name: NF5686_high_1
Description: NF5686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5686_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 17 - 399
Target Start/End: Original strand, 49753165 - 49753547
Alignment:
| Q |
17 |
actaataatgtaacaccaaattccattttcatacttcaataactgataacatatagaatagtgcgctttcagaaataaataaagcttaaagtcagatcta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49753165 |
actaataatgtaacaccaaattccattttcatacttcaataactgataacatatagaatagtgcgctttcagaaataaataaagcttaaagtcagatcta |
49753264 |
T |
|
| Q |
117 |
gaaactagaaaaagaaaacaagtagagttgttttcagtcatctgaatcatcaccaccgaagatcgaaaaacggttatacaaaagcacaagaatgagaaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49753265 |
gaaactagaaaaagaaaacaagtagagttgttttcagtcatctgaatcatcaccaccgaagatcgaaaaacggttatacaaaagcacaagaatgagaaca |
49753364 |
T |
|
| Q |
217 |
aggaatagagcaacaccgaacggtgatccactaacacgatgaatagtatcaggttcaccggtggagaaaatggcggagacgaaagatccacgttcagagg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49753365 |
aggaatagagcaacaccgaacggtgatccactaacacgatgaatagtatcaggttcaccggtggagaaaatggcggagacgaaagatccacgttcagagg |
49753464 |
T |
|
| Q |
317 |
agagaaactgaatcgtgagaagaaggatgattggtagaagaagaagaccgagtggactcagtagctccgatatagcttctgtg |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49753465 |
agagaaactgaatcgtgagaagaaggatgattggtagaagaagaagaccgagtggactcagtagctccgatatagcttctgtg |
49753547 |
T |
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