View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5686_high_2 (Length: 384)
Name: NF5686_high_2
Description: NF5686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5686_high_2 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Complemental strand, 228886 - 228521
Alignment:
| Q |
19 |
acagtaaaccattatgtcatcagcatacaaactatgtgatggaatattggagaatctggaagctttaatcaattcaagctttccctcctccactaatttt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
228886 |
acagtaaaccattatgtcatcagcatacaaactatgtgatggaatattggagaatctggaagctttaatcaattcaagctttccctcctccactaatttt |
228787 |
T |
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| Q |
119 |
gagatactccaacttaaaacatcttctgccaaacaaaataaaaggggagagagggggtccccctgcctcacccctctcttgcaatggaaataaccctctt |
218 |
Q |
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|||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
228786 |
gagatactcctatttaaaacatcttctgccagacaaaataaaaggggagagagggggtccccctgcctcacccctctcttgcaatggaaataaccctatt |
228687 |
T |
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| Q |
219 |
gaccgccattaatattgattgaaagagttgcagagttaagaatcacctctatccatttgcaaaaaatttcattaaaaccaaaacacttgagaactgcaag |
318 |
Q |
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| T |
228686 |
gactgccattaatattgattgaaagagttgcagagttaagaatcacctctatccatttgcaaaaaatttcattaaaaccaagacacttgagaactgaaag |
228587 |
T |
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| Q |
319 |
aagaaagctccaatcaagggcatcaaatgctttagagatattaatctttaaagccaggttccccca |
384 |
Q |
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| T |
228586 |
aagaaagctccaatcaagggtatcaaatgctttagagatatcaatctttaaagccaggttccccca |
228521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 104 - 213
Target Start/End: Original strand, 16011764 - 16011873
Alignment:
| Q |
104 |
tcctccactaattttgagatactccaacttaaaacatcttctgccaaacaaaataaaaggggagagagggggtccccctgcctcacccctctcttgcaat |
203 |
Q |
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| T |
16011764 |
tcctccacaagtcttgaaatacttctacttagaacatcttctgccaagcaaaataaaaggggagatagagggtctccctgtctcactccccttgtgcaat |
16011863 |
T |
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| Q |
204 |
ggaaataacc |
213 |
Q |
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| T |
16011864 |
tgaaataacc |
16011873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 128159 - 128101
Alignment:
| Q |
137 |
acatcttctgccaaacaaaataaaaggggagagagggggtccccctgcctcacccctct |
195 |
Q |
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| T |
128159 |
acatcttctgccaaacaaaagagaagtggagatagggggtcaccctgcctcacacctct |
128101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 32249116 - 32249178
Alignment:
| Q |
130 |
acttaaaacatcttctgccaaacaaaataaaaggggagagagggggtccccctgcctcacccc |
192 |
Q |
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| T |
32249116 |
acttaaaacatcttcagccaaacaaaagagtagaggagatagggggtctccctgcctcacccc |
32249178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 28337449 - 28337486
Alignment:
| Q |
269 |
atccatttgcaaaaaatttcattaaaaccaaaacactt |
306 |
Q |
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| T |
28337449 |
atccatttgcaaaaaatatcattaaaaccaaaacactt |
28337486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 13320979 - 13321038
Alignment:
| Q |
136 |
aacatcttctgccaaacaaaataaaaggggagagagggggtccccctgcctcacccctct |
195 |
Q |
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| T |
13320979 |
aacatcttctgccagacaaaatagaatgggcgatagggggtcaccctgcctcactcctct |
13321038 |
T |
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