View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5686_high_6 (Length: 252)
Name: NF5686_high_6
Description: NF5686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5686_high_6 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0196 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 228288 - 228530
Alignment:
| Q |
14 |
aatatgcacttataccaacaataaaatgaatttgtacccnnnnnnnnnt----gaaccatgcaatggccaatttcaagttcaaaatcatttctaaggttc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
228288 |
aatatgcacttataccaacaataaaatgaatttgtacccaaaaaaaaaaaaaagaaccatgcaatggccaatttcaagttcaaaatcatctctaaggttc |
228387 |
T |
|
| Q |
110 |
ttgcagatagattagccaaaatcatgcctcaaattgtttcaactgagcagaggggtttaatacaaggaagtaacattaaggattgcatctgcttagcatc |
209 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
228388 |
ttggagatagattagccaaaatcatgcctgaaattgtttcaactgagcagaggggtttaatacaaggaagtaacattaaggattgcatctgtttagcatc |
228487 |
T |
|
| Q |
210 |
agaagctgcaaatcttcttcataagaaagcatttgggggaacc |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
228488 |
agaagctgcaaatcttcttcataagaaagcatttgggggaacc |
228530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 14142026 - 14141968
Alignment:
| Q |
73 |
atggccaatttcaagttcaaaatcatttctaaggttcttgcagatagattagccaaaat |
131 |
Q |
| |
|
|||||||||||||||||||| || || |||||| || |||| ||||| ||||||||||| |
|
|
| T |
14142026 |
atggccaatttcaagttcaagattatatctaagattattgctgataggttagccaaaat |
14141968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 28358 - 28414
Alignment:
| Q |
69 |
tgcaatggccaatttcaagttcaaaatcatttctaaggttcttgcagatagattagc |
125 |
Q |
| |
|
||||||||||||||||||||| |||||| | || ||| | |||||||| |||||||| |
|
|
| T |
28358 |
tgcaatggccaatttcaagtttaaaatcttgtccaagatccttgcagacagattagc |
28414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 17630334 - 17630282
Alignment:
| Q |
73 |
atggccaatttcaagttcaaaatcatttctaaggttcttgcagatagattagc |
125 |
Q |
| |
|
||||| ||||| || |||||||||||||||||| || | |||||||||||||| |
|
|
| T |
17630334 |
atggcaaattttaaattcaaaatcatttctaagattttagcagatagattagc |
17630282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 32019953 - 32020005
Alignment:
| Q |
73 |
atggccaatttcaagttcaaaatcatttctaaggttcttgcagatagattagc |
125 |
Q |
| |
|
||||| ||||| || |||||||||||||||||| || | |||||||||||||| |
|
|
| T |
32019953 |
atggcaaattttaaattcaaaatcatttctaagattttagcagatagattagc |
32020005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University