View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5686_low_3 (Length: 352)
Name: NF5686_low_3
Description: NF5686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5686_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 345
Target Start/End: Complemental strand, 17846579 - 17846246
Alignment:
| Q |
17 |
gaagattgtatttttctcattttaaaaactccaaggtcaagtttaataggttaaattccaatgagatagctcatatcctaacgaagactgaccattacta |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17846579 |
gaagattgtatttttctcattttaaaaactccaaggtcaagtttaataggttaaattccaatgaggtagctcatatcctaacgaagactgaccattacta |
17846480 |
T |
|
| Q |
117 |
gctagtcccagtat-----atcatatacctcattatattaaacaacttattattaatcaaatgctacgagcatcttttcctaaaaaataaataattaatg |
211 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17846479 |
gctagtcccagtatctgttatcatatacctcgttatattaaacaacttattattaatcaaatgctacgagcatcttttcctaaaaaataaataattaatg |
17846380 |
T |
|
| Q |
212 |
ggttgggggagcacggatcaagtagtggaccgcataatttaatttgcacagtgtaatcaaatttctatttaaggcatgtggtttcataaaccatcatatc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17846379 |
ggttgggggagcacggatcaagtagtggaccgcataatttaatttgcacagtgtaatcaaatttctatttaaggcatgtggtttcataaaccatcatatc |
17846280 |
T |
|
| Q |
312 |
ataaaacatcccttattttgtttctttcatctct |
345 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
17846279 |
ataaaacatcccttattttgtttctttcttctct |
17846246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 263 - 314
Target Start/End: Complemental strand, 17821421 - 17821370
Alignment:
| Q |
263 |
tgtaatcaaatttctatttaaggcatgtggtttcataaaccatcatatcata |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17821421 |
tgtaatcaaatttctatttaaggcatgtggtttcatacaccatcatatcata |
17821370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 17821488 - 17821443
Alignment:
| Q |
212 |
ggttgggggagcacggatcaagtagtggaccgcataatttaatttg |
257 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||| |||||| |
|
|
| T |
17821488 |
ggttgggggagcacgaatcaagtagtgggccgcataattaaatttg |
17821443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 17855198 - 17855139
Alignment:
| Q |
273 |
tttctatttaaggcatgtggtttcataaacca---tcatatcataaaacatcccttattt |
329 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| |||||||||||||| | |||||||| |
|
|
| T |
17855198 |
tttctatttaagtcgtgtggtttcataaaccatcatcatatcataaaactttccttattt |
17855139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 19378757 - 19378708
Alignment:
| Q |
137 |
tacctcattatattaaacaacttattattaatcaaatgctacgagcatct |
186 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
19378757 |
tacctcattgtattgaacaacttattattaataaaatgctataagcatct |
19378708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University