View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5686_low_5 (Length: 296)
Name: NF5686_low_5
Description: NF5686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5686_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 151 - 282
Target Start/End: Complemental strand, 34484315 - 34484184
Alignment:
| Q |
151 |
gttattatatatcaactgtttttcgcttgttaaattttgcacacttttatgctttatctgacattatcagtttttcctaatgataacgggtcaatcctta |
250 |
Q |
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| T |
34484315 |
gttattatatatcaactgttttttgcttgttaaattttgcacacttaaatgctttatctgacattatcagtttttcctaatgataacgggtcaatcctta |
34484216 |
T |
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| Q |
251 |
atcgagtatggaatcaggcatgtaatttatct |
282 |
Q |
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| T |
34484215 |
atctagtatggaatcaggcatgtaatttatct |
34484184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 34484453 - 34484355
Alignment:
| Q |
13 |
aatatgaaggaaatggatgaaaagattgtcgcacttagtttatcagattgatgttctctaaaactttatgttgcgattttaattgatgttatttcaatc |
111 |
Q |
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| T |
34484453 |
aatatgaaggaattggatgaaaagattgtcgcacttagtttatcagattgatgttctctaaaactttatgttgtgattttgattgatgttatttcaatc |
34484355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 34498546 - 34498449
Alignment:
| Q |
13 |
aatatgaaggaaatggatgaaaagattgtcgcacttagtttatcagattgatgttctctaaaactttatgttgcgattttaattgatgttatttcaat |
110 |
Q |
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| T |
34498546 |
aatatgaaagaaattgatgacaagatggcttcacttagtttatcaaactgatgttttctaaaaccttatgttgtgatttttattgatgttatttcaat |
34498449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 34520141 - 34520055
Alignment:
| Q |
16 |
atgaaggaaatggatgaaaagattgtcgcacttagtttatcagattgatgttctctaaaactttatgttgcgattttaattgatgtt |
102 |
Q |
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| T |
34520141 |
atgaaggagattgatgacaagattgttgcactcagtttatgaaattgttgttgtcttaaactttatgttgtgattttgattgatgtt |
34520055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 3317035 - 3316939
Alignment:
| Q |
13 |
aatatgaaggaaatggatgaaaagattgtcgcacttagtttatcagattgatgttctctaaaactttatgttgcgattttaattgatgttatttcaat |
110 |
Q |
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| T |
3317035 |
aatatgaaggaaattgatgacaagatggcttcacttagtttatcaaattgatgttttctaaaa-tttatgttgtgatttttattgatgttatttcaat |
3316939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 9598426 - 9598333
Alignment:
| Q |
17 |
tgaaggaaatggatgaaaagattgtcgcacttagtttatcagattgatgttctctaaaactttatgttgcgattttaattgatgttatttcaat |
110 |
Q |
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|||||||||| ||||| ||||| | |||||||||||||| | | ||||| ||||||||||||||||| ||||| | ||||||||||||||| |
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| T |
9598426 |
tgaaggaaattgatgacaagatggcttcacttagtttatcaaactaatgttttctaaaactttatgttgttatttttactgatgttatttcaat |
9598333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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