View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5686_low_8 (Length: 234)
Name: NF5686_low_8
Description: NF5686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5686_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 17781862 - 17782080
Alignment:
| Q |
1 |
tttgttgctctgcatacaccggccacgtagcaattggcgcaccataccacaaactctccaatatcgagttccaaccacaatgcgacacgaatccacccac |
100 |
Q |
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| T |
17781862 |
tttgttgctctgcatacaccggccacgtagcaattggcacaccataccacaaactctccaatatcgagttccaaccacaatgcgagacgaatccacccac |
17781961 |
T |
|
| Q |
101 |
cgccttatgggccaataccttggcttgtgggacccaaccacaaactatacccatccccgcagtccgttccaaaaacccgtccggtagaacattgtcgtaa |
200 |
Q |
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| T |
17781962 |
ggccttgtgggccagaaccttcgcttgtgggacccacccacaaactatacccatccccgcagcccgtgtcaaaaacccgtccggtagaacattgtcgtaa |
17782061 |
T |
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| Q |
201 |
cttgtgtaatctcttgggt |
219 |
Q |
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||||||||||||||||||| |
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| T |
17782062 |
cttgtgtaatctcttgggt |
17782080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 20582207 - 20582408
Alignment:
| Q |
1 |
tttgttgctctgcatacaccggccacgtagcaattggcgcaccataccacaaactctccaatatcgagttccaaccacaatgcgacacgaatccacccac |
100 |
Q |
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|||||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
20582207 |
tttgttgctctgcatagaccggccacgtggcaattggcacaccaaaccacaaactctctaaaatcgagttccaaccacaatgcgacacgaatccacccac |
20582306 |
T |
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| Q |
101 |
cgccttatgggccaataccttggcttgtgggacccaaccacaaactatacccatccccgcagtccgttccaaaaacccgtccggtagaacattgtcgtaa |
200 |
Q |
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| T |
20582307 |
tgccttgtgggccagtaccttggcttgtgggacccatccacatactatacccattcccacagtccgctccaaaaacccatccggtagaacattctcgtaa |
20582406 |
T |
|
| Q |
201 |
ct |
202 |
Q |
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|| |
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| T |
20582407 |
ct |
20582408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 20563044 - 20563262
Alignment:
| Q |
1 |
tttgttgctctgcatacaccggccacgtagcaattggcgcaccataccacaaactctccaatatcgagttccaaccacaatgcgacacgaatccacccac |
100 |
Q |
| |
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|||||||||| ||||| || |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20563044 |
tttgttgctccgcataaactggccacgtggcaattggcacaccataccacaaactctccaatatcgagttccaaccacaatgcgacacgaatccacccac |
20563143 |
T |
|
| Q |
101 |
cgccttatgggccaataccttggcttgtgggacccaaccacaaactatacccatccccgcagtccgttccaaaaacccgtccggtagaacattgtcgtaa |
200 |
Q |
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||||||||||| | ||||| |||||||| | ||| ||||| || |||||||||||| || ||| |||||| || |||||||||||||| || ||| |
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| T |
20563144 |
tgccttatgggctagcacctttgcttgtggaatccacccacacacaatacccatccccatggttcgtctcaaaaatccatccggtagaacattctcataa |
20563243 |
T |
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| Q |
201 |
cttgtgtaatctcttgggt |
219 |
Q |
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|| | |||||||||||| |
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| T |
20563244 |
ctcataaaatctcttgggt |
20563262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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