View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5687-Insertion-2 (Length: 1111)
Name: NF5687-Insertion-2
Description: NF5687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5687-Insertion-2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 155 - 921
Target Start/End: Original strand, 8425578 - 8426366
Alignment:
| Q |
155 |
attttgtctttccttgaattatgtttaattggttggatttagaagatgattaattggtcgaatnnnnnnnnnnnn----tacatgatattagagtaaatg |
250 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
8425578 |
attttgtctttccttgacttatgtttaattggttggatttagaagatgattaattggtcggataaaaaaaatattaaattacatgatattagagtaaatg |
8425677 |
T |
|
| Q |
251 |
agtaaattatcttttttatcaaatcatattgtgctatgtcctaattagattagattaacattcaaacaagatagaattgaatcaaagttcagtggttaga |
350 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8425678 |
agtaaattatctttt-tatcaaatcatactgtgctatgtcctaattagattagattaacattcaaacaagatagaattgaatcaaagttcagtggttaga |
8425776 |
T |
|
| Q |
351 |
acttagtcttgtaatctcaattcaagtatagagtttaaagttcatcgaaaattattgtaaaatgattattagtgccagtttgattaacaattgtttcacc |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8425777 |
acttagtcttgtaatctcaattcaagtatagagtttaaagttcatcgaaaattgttgtaaaatgattattagtgccagtttgataaacaattgtttcacc |
8425876 |
T |
|
| Q |
451 |
ttctacaatctttttaaaatataaatgctattaattttctacccaactcatatacaggataagagtcttaactagagagatgaaatataataggtttaag |
550 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8425877 |
ttctccaatctttttaaaatataaatgctagtaactttttacccaactcatatacaggataagagttttaactagagagatgaaatataataggtttaag |
8425976 |
T |
|
| Q |
551 |
attaaattattatactttgttgtctcgtcaaacactaaattg-----------------ttatcatatcatgtttacttcgttgtcactatcaaacagac |
633 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8425977 |
attaaattattatattttgttgtctcgtcaaacgctaaattgtgatcagatataataacttatcatatcatgtctacttcgttgtcactatcaaacagac |
8426076 |
T |
|
| Q |
634 |
cctacattctttgagttcaaannnnnnnatcaatatcttcacaagttttatagcgttgannnnnnnnaaatatgcataaaactttgtt---cnnnnnnnn |
730 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||| |||| |
|
|
| T |
8426077 |
cctacattttttgagttcaaatttttttatcaatatcttcacaagttttatagctttgattttttttaaatatgcataaaactgtgttaaaaaaaaatat |
8426176 |
T |
|
| Q |
731 |
gcataaaactaagatagaagaaaatattttaaattacgttattgtaaagggtgacttagtcaaaataaattcaaaatgtaataaatatggtgacaaata- |
829 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8426177 |
gcataaaactaagatagaagaaaatattttaaattacgttagtgtaaagggtgacttagtcaaaataaattcaaaatgt-ataaatatggtgacaaatat |
8426275 |
T |
|
| Q |
830 |
ttttgttaaaaatacttagaaaggattttttattgtgaaaagatttaggtaagtcacttttcttcttaagctttaagctaaaagaaagttca |
921 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8426276 |
ttttgttaaaaatacttagaaaaga-tttttattgtgaaaagatttaggtaagtcacttttcttcttaagctttaagctaaaaaaaagttca |
8426366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 6e-74
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 8425403 - 8425556
Alignment:
| Q |
8 |
ctttggcctaggattgcaagtggtgccaagtgccaatgccataatatgagtgtggattctgtttcaagattgcaagtagtgtcgatgccattgtggcaat |
107 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8425403 |
ctttggcctaggattgcaaatgctgccaagtgccaatgccataatatgagtgtggattctgtttcaagattgcaagtagtgccgatgccattgtggcaat |
8425502 |
T |
|
| Q |
108 |
tttaatacaagagagaatcatctttatgtttttaggtctttcaagagattttgt |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8425503 |
tttaatacaagagagaatcatctttatgtttttaggtctttcaagagattttgt |
8425556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 38 - 161
Target Start/End: Original strand, 30235427 - 30235552
Alignment:
| Q |
38 |
tgccaatgccataatatgagtgtggattctgtttcaagattgcaagtagtgtcgatgccat--tgtggcaattttaatacaagagagaatcatctttatg |
135 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||| | | ||||||||| |
|
|
| T |
30235427 |
tgccaatgccattgtatgagcgtggattctgtttcaagattgcaagtagtgccgatgccattgtgtgacaattttaatacaagagatacttatctttatg |
30235526 |
T |
|
| Q |
136 |
tttttaggtctttcaagagattttgt |
161 |
Q |
| |
|
||||||||| || ||||||||||||| |
|
|
| T |
30235527 |
tttttaggttttgcaagagattttgt |
30235552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 2e-24; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 38 - 161
Target Start/End: Original strand, 26849233 - 26849358
Alignment:
| Q |
38 |
tgccaatgccataatatgagtgtggattctgtttcaagattgcaagtagtgtcgatgccatt--gtggcaattttaatacaagagagaatcatctttatg |
135 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||| |||||| ||||||||| |||| ||||||||| |||| || | | |||||||| |
|
|
| T |
26849233 |
tgccaatgccattgtatgagtgtggattatgtttcaagattgcaggtagtgctgatgccatttagtggaaattttaatccaagcgaaacttttctttatg |
26849332 |
T |
|
| Q |
136 |
tttttaggtctttcaagagattttgt |
161 |
Q |
| |
|
|||||||||||| ||||||||||||| |
|
|
| T |
26849333 |
tttttaggtcttgcaagagattttgt |
26849358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 15425510 - 15425591
Alignment:
| Q |
38 |
tgccaatgccataatatgagtgtggattctgtttcaagattgcaagtagtgtcgatgcc--attgtggcaattttaatacaa |
117 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||| ||||||||| ||||||| |||||||| ||||||||||| |
|
|
| T |
15425510 |
tgccaatgccattgtatgagtgttgattctgtttcaagatcgcaagtagttccgatgcccttttgtggcagttttaatacaa |
15425591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 22475941 - 22475860
Alignment:
| Q |
38 |
tgccaatgccataatatgagtgtggattctgtttcaagattgcaagtagtgtcgatgcca--ttgtggcaattttaatacaa |
117 |
Q |
| |
|
||||||| |||| |||||||||||||| ||||||||||||||| |||||| ||||||| || ||| ||||||||||||| |
|
|
| T |
22475941 |
tgccaataccattgtatgagtgtggattatgtttcaagattgcaggtagtgctgatgccattttttggaaattttaatacaa |
22475860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 212
Target Start/End: Original strand, 26849420 - 26849449
Alignment:
| Q |
183 |
ttggttggatttagaagatgattaattggt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
26849420 |
ttggttggatttagaagatgattaattggt |
26849449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 1530773 - 1530854
Alignment:
| Q |
38 |
tgccaatgccataatatgagtgtggattctgtttcaagattgcaagtagtgtcgatgcca--ttgtggcaattttaatacaa |
117 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||| |||||| ||||||| |||||| ||||||||||||| |
|
|
| T |
1530773 |
tgccaatgccattgtatgagtgtggattatgtttcaagattgcaggtagtgctgatgccattttgtggaaattttaatacaa |
1530854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 25154188 - 25154270
Alignment:
| Q |
38 |
tgccaatgccataatatgagtgtggattctgtttcaagattgcaagtagtgtcgatgcc--attgtggcaattttaatacaag |
118 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| |||||||| |||||||||||| |
|
|
| T |
25154188 |
tgccaatgccattgcatgagtgttgattctgtttcaagattgcaagtagttccgatgcccttttgtggcagttttaatacaag |
25154270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 5690100 - 5690016
Alignment:
| Q |
38 |
tgccaatgccataatatgagtgtggattctgtttcaag--attgcaagtagtgtcgatgcc--attgtggcaattttaatacaag |
118 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||| |||||||||||| |||||| |||||||| |||||||||||| |
|
|
| T |
5690100 |
tgccaatgccattgtatgagtgttgattctgtttcaagatattgcaagtagttctgatgcccttttgtggcagttttaatacaag |
5690016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 29759108 - 29759190
Alignment:
| Q |
38 |
tgccaatgccataatatgagtgtggattctgtttcaagattgcaagtagtgtcgatgcc--attgtggcaattttaatacaag |
118 |
Q |
| |
|
|||||||| ||| ||||||||| |||||||||||||||||||||||||| | ||||| |||||||| |||||||||||| |
|
|
| T |
29759108 |
tgccaatgtcattgtatgagtgttgattctgtttcaagattgcaagtagttccaatgcccttttgtggcagttttaatacaag |
29759190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University