View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5687-Insertion-3 (Length: 955)
Name: NF5687-Insertion-3
Description: NF5687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5687-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 523; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 8 - 578
Target Start/End: Original strand, 52584243 - 52584810
Alignment:
| Q |
8 |
gttgttgctgagattggttattgattacctgaggcggaggattcatcatctgaggattcatcatctgagactggttcatcttgttcaaattcatcatcat |
107 |
Q |
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| T |
52584243 |
gttgttgctgagattggttgttgattacctgaggcggaggattcatcatctgaggattcatcatctgagactggttcatcttgttcaaattcatcatcat |
52584342 |
T |
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| Q |
108 |
ctgagattgatcgttcatcgttaccacaaaaccctacgtacaacaaaattaacaacgatatcttcaaattttggttaaacaaaaattaattgccgatcag |
207 |
Q |
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| T |
52584343 |
ctgagattgatcgttcatcgttaccacaaaaccctacgtacaacaaaattaacaacgatatcttcaaattt-ggttaaacaaaaattaattgccgatcag |
52584441 |
T |
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| Q |
208 |
aaaaatcttgatcggcagcgagcgaggaaaccctaaatgaagaaattaaagagagtatttgtaaggaagggtgaaatcgtgtattgtattgagatttcac |
307 |
Q |
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| T |
52584442 |
aaaa-tcttgatcggcagcgagcgaggaaaccctaaattaagaaattaaagagagtagttgtaaggaagggtgaaatcgtgtattgtattgagatttcac |
52584540 |
T |
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| Q |
308 |
aaaggtatgaggttttgatttgattatttagtattatcgattgattcaaagaaagaaaaagtgtggttatcgttcgttcgttcgttggttgaaaatggat |
407 |
Q |
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| T |
52584541 |
aaaggtatgaggttttgatttgattatttagtattatcgattgattcaaagaaagaaaa-gtgtggttatcgttcgttcgttcgttggttgaaaatggat |
52584639 |
T |
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| Q |
408 |
cttatttcttcttcttgatttgattttgataattgatatggtcacgccaaccgaacagagttatatactctcatgggaatatattgggcggctagatttc |
507 |
Q |
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| T |
52584640 |
cttatttcttctttttgatttgattttgataattgatatggtcacgccaaccgaacagagttatatactctcatgggaatatattgggcggctagatttc |
52584739 |
T |
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| Q |
508 |
catgcaacaaacggacggtttcgattttagatgcgcgcatgtacacacgtcactcgctccttagaactcga |
578 |
Q |
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| T |
52584740 |
catgcaacaaacgaacggtttcgattttagatgcgcgcatgtacacacgtcactcgctccttaaaactcga |
52584810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 780 - 955
Target Start/End: Original strand, 52592739 - 52592914
Alignment:
| Q |
780 |
ttgattaatgttataagatactcttcaacgtttatcatactttaaatagtccatgtaatttggataatattcgagaataggttatataacaaaaggcaaa |
879 |
Q |
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| T |
52592739 |
ttgattaatgttacaagacactcttcaacgtttatcatactttaaatagtccatgtaatttggataatattcgagaataggttatataacaaaaggcaac |
52592838 |
T |
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| Q |
880 |
gattttatatttgggttcttcgtattctaccttcacgctattnnnnnnntatgtctataacttttctaatcttgtg |
955 |
Q |
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| T |
52592839 |
gattttatatttgggttcttcgtattctaccttcacgcaattaaaaaaatatgtctataacttttctaatcttgtg |
52592914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 632 - 716
Target Start/End: Original strand, 52592583 - 52592675
Alignment:
| Q |
632 |
cttgggatcttagagtttgctccctgga--------gcttggattgtctcatcggattagtcggttctcggatcgaatatcgagtttcaaaag |
716 |
Q |
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| T |
52592583 |
cttgagatcttagagtttgctccctggacaacttcagctgggattgtctcatcggattagtcggttctcagatcggataccgagtttcaaaag |
52592675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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