View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5687-Insertion-5 (Length: 163)

Name: NF5687-Insertion-5
Description: NF5687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5687-Insertion-5
NF5687-Insertion-5
[»] chr1 (3 HSPs)
chr1 (7-145)||(10415475-10415613)
chr1 (9-146)||(10409780-10409917)
chr1 (9-148)||(10420364-10420503)
[»] chr5 (6 HSPs)
chr5 (7-148)||(35386273-35386414)
chr5 (9-148)||(35755075-35755214)
chr5 (7-148)||(35410934-35411075)
chr5 (7-148)||(35376673-35376814)
chr5 (9-148)||(35367121-35367260)
chr5 (7-146)||(35423934-35424073)
[»] chr7 (1 HSPs)
chr7 (9-148)||(29622918-29623057)
[»] chr2 (3 HSPs)
chr2 (9-146)||(30626334-30626471)
chr2 (9-146)||(30663285-30663422)
chr2 (9-146)||(30671965-30672102)
[»] chr8 (2 HSPs)
chr8 (7-112)||(15294046-15294151)
chr8 (7-112)||(15474415-15474520)
[»] chr3 (1 HSPs)
chr3 (99-148)||(1154007-1154056)


Alignment Details
Target: chr1 (Bit Score: 91; Significance: 2e-44; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 7 - 145
Target Start/End: Original strand, 10415475 - 10415613
Alignment:
Q  7 atatatcctattgttcctttaattgtagaggaaattacttgatctttacttgaatgctcggtggctccaggaataatcctagctaaaccaaagtctccca 106  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| |||| | ||||||||| |||||||||||||    
T  10415475 atatatcctatagttcctttaatagtagaggaaatgacttgatctttacttgaatgctctgtggctccaagaatgagcctagctaagccaaagtctccca 10415574  T
Q  107 agtgggctacattgtcatcatcaagaagaacattgcttg 145  Q
    |||||||||||  |||||| ||||||||||| |||||||    
T  10415575 agtgggctacaacgtcatcgtcaagaagaacgttgcttg 10415613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 10409780 - 10409917
Alignment:
Q  9 atatcctattgttcctttaattgtagaggaaattacttgatctttacttgaatgctcggtggctccaggaataatcctagctaaaccaaagtctcccaag 108  Q
    ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| || || |||||| |||| | ||||||||| ||||||||||| |||    
T  10409780 atatcctatagttcccttaattgtagaggaaataacttgatctttacttgaatgttctgtagctccacgaattagcctagctaagccaaagtctcctaag 10409879  T
Q  109 tgggctacattgtcatcatcaagaagaacattgcttgg 146  Q
    || ||||||||||||||||| |||||||||||||||||    
T  10409880 tgagctacattgtcatcatcgagaagaacattgcttgg 10409917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 10420364 - 10420503
Alignment:
Q  9 atatcctattgttcctttaattgtagaggaaattacttgatctttacttgaatgctcggtggctccaggaataatcctagctaaaccaaagtctcccaag 108  Q
    |||||||||  |||| || ||||| || ||| | |||||||||||||||||||| ||  ||| |||| |||| | ||||||||| |||||||||||||||    
T  10420364 atatcctatacttcccttgattgtggaagaattaacttgatctttacttgaatggtctctggttccaagaatgagcctagctaagccaaagtctcccaag 10420463  T
Q  109 tgggctacattgtcatcatcaagaagaacattgcttggct 148  Q
    || |||||| ||||||| || |||||||| ||||| ||||    
T  10420464 tgagctacaatgtcatcgtccagaagaacgttgctcggct 10420503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 8e-44; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 8e-44
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 35386414 - 35386273
Alignment:
Q  7 atatatcctattgttcctttaattgtagaggaaattacttgatctttacttgaatgctcggtggctccaggaataatcctagctaaaccaaagtctccca 106  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||| |||| |||| |||||||| || |||||||||||||    
T  35386414 atatatcctatagttcctttaatagtagaggaaataacttgatctttacttgaatgctctgtggttccaagaatgatcctagccaagccaaagtctccca 35386315  T
Q  107 agtgggctacattgtcatcatcaagaagaacattgcttggct 148  Q
    |||||||||||  |||||| ||||||||||| ||||||||||    
T  35386314 agtgggctacaaagtcatcgtcaagaagaacgttgcttggct 35386273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 35755214 - 35755075
Alignment:
Q  9 atatcctattgttcctttaattgtagaggaaattacttgatctttacttgaatgctcggtggctccaggaataatcctagctaaaccaaagtctcccaag 108  Q
    ||||||||| ||||| ||||||||||||||| | |||||||||||||||||||| || || |||||| |||| | ||||||||  |||||||||||||||    
T  35755214 atatcctatagttcccttaattgtagaggaattaacttgatctttacttgaatgttctgtagctccatgaatgagcctagctaggccaaagtctcccaag 35755115  T
Q  109 tgggctacattgtcatcatcaagaagaacattgcttggct 148  Q
    ||||||||| | ||||||||||||||||||||||||||||    
T  35755114 tgggctacaatttcatcatcaagaagaacattgcttggct 35755075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 35411075 - 35410934
Alignment:
Q  7 atatatcctattgttcctttaattgtagaggaaattacttgatctttacttgaatgctcggtggctccaggaataatcctagctaaaccaaagtctccca 106  Q
    ||||||||||| |||||||||||||||||  |||| ||||||||||||||||||||||| |||| |||| |||| | |||||| || |||||||||||||    
T  35411075 atatatcctatagttcctttaattgtagaaaaaataacttgatctttacttgaatgctctgtggttccaagaatgagcctagccaagccaaagtctccca 35410976  T
Q  107 agtgggctacattgtcatcatcaagaagaacattgcttggct 148  Q
    |||||||||||  |||||| ||||||||||| ||||| ||||    
T  35410975 agtgggctacaaagtcatcgtcaagaagaacgttgctcggct 35410934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 7e-32
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 35376814 - 35376673
Alignment:
Q  7 atatatcctattgttcctttaattgtagaggaaattacttgatctttacttgaatgctcggtggctccaggaataatcctagctaaaccaaagtctccca 106  Q
    ||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||  || || |||||| | |  | ||||||||| ||||||||||| |    
T  35376814 atatatcctatagttcctttaattgtggaggaaataacttgatttttacttgaatattctgtagctccatggaggaacctagctaagccaaagtctccta 35376715  T
Q  107 agtgggctacattgtcatcatcaagaagaacattgcttggct 148  Q
    ||||||| |||  |||||||||||||||||||||||||||||    
T  35376714 agtgggccacaccgtcatcatcaagaagaacattgcttggct 35376673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 35367260 - 35367121
Alignment:
Q  9 atatcctattgttcctttaattgtagaggaaattacttgatctttacttgaatgctcggtggctccaggaataatcctagctaaaccaaagtctcccaag 108  Q
    ||||||||| ||||| |||||||| || ||| | |||||||||||||||||||| ||  ||| |||| |||| | ||||||||| |||||||||||||||    
T  35367260 atatcctatagttcccttaattgtggaagaattaacttgatctttacttgaatggtctctggttccaagaatgagcctagctaagccaaagtctcccaag 35367161  T
Q  109 tgggctacattgtcatcatcaagaagaacattgcttggct 148  Q
    ||||||||| ||||||| || |||||||| ||||| ||||    
T  35367160 tgggctacagtgtcatcgtccagaagaacgttgctcggct 35367121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 7e-26
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 35424073 - 35423934
Alignment:
Q  7 atatatcctattgttcctttaattgtagaggaaattacttgatctttacttgaatgctcggtggctccaggaataatcctagctaaaccaaagtctccca 106  Q
    ||||||||||| |||||||||||||| |||||||| ||||||| |||||||||||  || || |||||| | |  | ||||||||  ||||||||||| |    
T  35424073 atatatcctatagttcctttaattgtggaggaaataacttgatttttacttgaatattctgtagctccatggaggaacctagctacgccaaagtctccta 35423974  T
Q  107 agtgggctacattgtcatcatcaagaagaacattgcttgg 146  Q
    ||||||  |||  |||||||||||||||||||||||||||    
T  35423973 agtgggtcacaccgtcatcatcaagaagaacattgcttgg 35423934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 29622918 - 29623057
Alignment:
Q  9 atatcctattgttcctttaattgtagaggaaattacttgatctttacttgaatgctcggtggctccaggaataatcctagctaaaccaaagtctcccaag 108  Q
    ||||||||| ||||| |||||||| || ||| | | |||||| ||||||||||| |  | || ||||  ||| | ||||||||| |||||||||||||||    
T  29622918 atatcctatagttcccttaattgtggaagaagtaatttgatcattacttgaatggtttgaggatccattaatgagcctagctaatccaaagtctcccaag 29623017  T
Q  109 tgggctacattgtcatcatcaagaagaacattgcttggct 148  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  29623018 tgggctacaatgtcatcatcaagaagaacattgcttggct 29623057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 3e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 9 - 146
Target Start/End: Complemental strand, 30626471 - 30626334
Alignment:
Q  9 atatcctattgttcctttaattgtagaggaaattacttgatctttacttgaatgctcggtggctccaggaataatcctagctaaaccaaagtctcccaag 108  Q
    ||||||||| ||||| |||||||| || ||| | |||||||||  ||||||||   | ||||||||| |||| | ||| || || |||||||||||||||    
T  30626471 atatcctatagttcccttaattgtggacgaattaacttgatctacacttgaatatgctgtggctccatgaattaaccttgccaatccaaagtctcccaag 30626372  T
Q  109 tgggctacattgtcatcatcaagaagaacattgcttgg 146  Q
    ||||||||  ||||||||||||||||||||||| ||||    
T  30626371 tgggctaccatgtcatcatcaagaagaacattgtttgg 30626334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 9 - 146
Target Start/End: Complemental strand, 30663422 - 30663285
Alignment:
Q  9 atatcctattgttcctttaattgtagaggaaattacttgatctttacttgaatgctcggtggctccaggaataatcctagctaaaccaaagtctcccaag 108  Q
    ||||||||| ||||| |||||||| || ||| | |||||||||  ||||||||   | ||||||||| |||| | ||| || || |||||||||||||||    
T  30663422 atatcctatagttcccttaattgtggacgaattaacttgatctacacttgaatatgctgtggctccatgaattaaccttgccaatccaaagtctcccaag 30663323  T
Q  109 tgggctacattgtcatcatcaagaagaacattgcttgg 146  Q
    ||||||||  ||||||||||||||||||||||| ||||    
T  30663322 tgggctaccatgtcatcatcaagaagaacattgtttgg 30663285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 9 - 146
Target Start/End: Complemental strand, 30672102 - 30671965
Alignment:
Q  9 atatcctattgttcctttaattgtagaggaaattacttgatctttacttgaatgctcggtggctccaggaataatcctagctaaaccaaagtctcccaag 108  Q
    ||||||||| ||||| |||||||| || ||| | |||||||||  ||||||||   | ||||||||| |||| | ||| || || |||||||||||||||    
T  30672102 atatcctatagttcccttaattgtggacgaattaacttgatctacacttgaatatgctgtggctccatgaattaaccttgccaatccaaagtctcccaag 30672003  T
Q  109 tgggctacattgtcatcatcaagaagaacattgcttgg 146  Q
    ||||||||  ||||||||||||||||||||||| ||||    
T  30672002 tgggctaccatgtcatcatcaagaagaacattgtttgg 30671965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 6e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 15294151 - 15294046
Alignment:
Q  7 atatatcctattgttcctttaattgtagaggaaattacttgatctttacttgaatgctcggtggctccaggaataatcctagctaaaccaaagtctccca 106  Q
    ||||||||||| |||||||||||  |||||| ||| |||| ||||||||||||||||||  ||| |||| |||| | |||||| || |||||||||||||    
T  15294151 atatatcctatagttcctttaatcttagaggcaataactttatctttacttgaatgctctatggttccatgaatgagcctagccaagccaaagtctccca 15294052  T
Q  107 agtggg 112  Q
    ||||||    
T  15294051 agtggg 15294046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 15474520 - 15474415
Alignment:
Q  7 atatatcctattgttcctttaattgtagaggaaattacttgatctttacttgaatgctcggtggctccaggaataatcctagctaaaccaaagtctccca 106  Q
    ||||||||||| |||||||||||  |||||| ||| |||| ||||||||||||||||||  ||| |||| |||| | |||||| || |||||||||||||    
T  15474520 atatatcctatagttcctttaatcttagaggcaataactttatctttacttgaatgctctatggttccatgaatgagcctagccaagccaaagtctccca 15474421  T
Q  107 agtggg 112  Q
    ||||||    
T  15474420 agtggg 15474415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 6e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 1154056 - 1154007
Alignment:
Q  99 gtctcccaagtgggctacattgtcatcatcaagaagaacattgcttggct 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1154056 gtctcccaagtgggctacattgtcatcatcaagaagaacattgcttggct 1154007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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