View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5687_high_2 (Length: 346)
Name: NF5687_high_2
Description: NF5687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5687_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 336
Target Start/End: Original strand, 52583911 - 52584243
Alignment:
| Q |
13 |
aatattatttggaatacccatggaaatagtctggttgggtttttccattctcctaatatctttgcgcttgtcgctaaccttctttcccttccagttattg |
112 |
Q |
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| T |
52583911 |
aatattatttggaatacccatggaaatagtctggttgggtttatccattctcctaatatctttgcgcttgtcgctaaccttctttcccttccagttattg |
52584010 |
T |
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| Q |
113 |
ttattattacttcttcccggcttcaaattaggaaaattatgtttgatattagggttctgaaatttcatgttaggatccaaaggaagctgctgttgagacc |
212 |
Q |
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| T |
52584011 |
ttattattacttcttcccggcttcaaattaggaaaattatgtttgatattagggttctgaaatttcatgttaggatccaaaggaagctgctgttgagacc |
52584110 |
T |
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| Q |
213 |
aaaccttgttattatatccaccaccgccacgattctgggtcatcatc---------ggaggaggaagctgttgttgattctgactcatcatcttcatctg |
303 |
Q |
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| T |
52584111 |
aaaccttgttattatatccaccaccgccacgattctgggtcatcatcggaggaggaggaggaggaagctgttgttgattctgactcatcatcttcatctg |
52584210 |
T |
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| Q |
304 |
tggttggtgagagagtaactgagattgttgttg |
336 |
Q |
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| T |
52584211 |
tggttggtgagagagtaactgaggttgttgttg |
52584243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 54108999 - 54109077
Alignment:
| Q |
159 |
tattagggttctgaaatttcatgttaggatccaaaggaagctgctgttgagaccaaaccttgttattatatccaccacc |
237 |
Q |
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| T |
54108999 |
tattagggttctgaaatttcatgttaggatccagaggaagctgctgttgagaccaaaccttgttattatattcaccacc |
54109077 |
T |
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