View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5687_low_1 (Length: 417)
Name: NF5687_low_1
Description: NF5687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5687_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 481622 - 481232
Alignment:
| Q |
17 |
acatatattgctcagaaactatatcaaggaaatcaaaaatagaaaagctatggtgacattcatttattgtaacaaatttgactagattatgtggataatc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
481622 |
acatatattgctcagaaactatatcaaggaaatcaaaaatagaaaagctatggtgacattcatttattgtaacaaatttgactagattatgtggataatc |
481523 |
T |
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| Q |
117 |
tcaccattaaaatgtatgtattaagctctacaacttattaacattataagggggatcgaatgcattttaatgtttggaggatccaaatccctcaattaat |
216 |
Q |
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| T |
481522 |
tcaccattaaaatgtatgtattaagctctacaacttattaacattataagggggatcgaatgcattttaatgtttggaggatccaaatccctcaattaat |
481423 |
T |
|
| Q |
217 |
agagtaatgtggactaagcaggtaacagaggttcttccaaaacagtttcataatatgttttttcacaagattcatttatagaaagattcccttcctctgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
481422 |
agagtaatgtggactaagcaggtaacagaggttcttccaaaacagtttcataatatgttttttcacaagattcatttataaaaagattcccttcctctgt |
481323 |
T |
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| Q |
317 |
ctcattaataatcatcaactttggatctgtcttctctttgacttcaactacatcttcagctttaccccaaagtacaatatacaaacctatg |
407 |
Q |
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| T |
481322 |
ctcattaataatcatcaactttggatctgtcttctctttgacttcagctacatcttcagctttaccccaaagtacagtatacaaacctatg |
481232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 336 - 400
Target Start/End: Complemental strand, 449711 - 449647
Alignment:
| Q |
336 |
tttggatctgtcttctctttgacttcaactacatcttcagctttaccccaaagtacaatatacaa |
400 |
Q |
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| T |
449711 |
tttggaactatcttctctttaacatcaactacttcttcagctttaccccaaagtacaatatacaa |
449647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 403
Target Start/End: Complemental strand, 469097 - 469054
Alignment:
| Q |
360 |
tcaactacatcttcagctttaccccaaagtacaatatacaaacc |
403 |
Q |
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| T |
469097 |
tcaactacttcttcagctttaccccaaagtacaatatacaaacc |
469054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 388
Target Start/End: Complemental strand, 475668 - 475616
Alignment:
| Q |
336 |
tttggatctgtcttctctttgacttcaactacatcttcagctttaccccaaag |
388 |
Q |
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| T |
475668 |
tttggatctatcttctgtttgacatggactacatcttccgctttaccccaaag |
475616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 347 - 400
Target Start/End: Original strand, 27489283 - 27489336
Alignment:
| Q |
347 |
cttctctttgacttcaactacatcttcagctttaccccaaagtacaatatacaa |
400 |
Q |
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| T |
27489283 |
cttctctttcacatcaactacatcttcagcttttccccaaagaacaatatacaa |
27489336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 27489078 - 27489142
Alignment:
| Q |
20 |
tatattgctcagaaactatatcaaggaaatcaaaaatagaaaagctatggtgacattcatttatt |
84 |
Q |
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|||| |||||| || |||||||||||||| |||||||||||| || | |||||||||||||||| |
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| T |
27489078 |
tataatgctcaaaagctatatcaaggaaagcaaaaatagaaatgccaatgtgacattcatttatt |
27489142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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