View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5687_low_3 (Length: 277)
Name: NF5687_low_3
Description: NF5687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5687_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 262
Target Start/End: Original strand, 8425156 - 8425407
Alignment:
| Q |
11 |
caaaggtagcttgaatcgtcttccttcagcttgtgttggtgacatggtgatggctactatgaagaagggaaaacctgatctcaggaagaaggttttgcca |
110 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8425156 |
caaaggtaggttgaatcgtcttccttcagcttgtgttggtgacatggtgatggctactatgtagaagggaaaacctgatctcaggaagaaggttttgcca |
8425255 |
T |
|
| Q |
111 |
gctgccatcgttcgccagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctggtgttattgtgaatcctaagggagaaa |
210 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8425256 |
gctgtcatcgttcgtcagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctggtgttattgtgaatcctaagggagaaa |
8425355 |
T |
|
| Q |
211 |
tgaaaggttctgctatcactggaccaattggtaaggggtgtgttgatctttg |
262 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
8425356 |
tgaaaggttctgctatcactggaccaattggtaaggagtgtgctgatctttg |
8425407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 30234247 - 30234406
Alignment:
| Q |
15 |
ggtagcttgaatcgtcttccttcagcttgtgttggtgacatggtgatggctactatgaagaagggaaaacctgatctcaggaagaaggttttgccagctg |
114 |
Q |
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| T |
30234247 |
ggtaggttgaatcgtcttccttcagcttgtgctggtgacatggtgatggctactgtgaagaagggaaagcctgatctcaggaagaaggttttgccagctg |
30234346 |
T |
|
| Q |
115 |
ccatcgttcgccagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaag |
174 |
Q |
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||||||||| ||| | ||||| ||||||| |||||| ||||||||||||||||| |||| |
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| T |
30234347 |
tcatcgttcgtcagcgtaagccatggcgccgaaaggacggtgtcttcatgtactttgaag |
30234406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 30235004 - 30235049
Alignment:
| Q |
173 |
agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30235004 |
agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt |
30235049 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 15 - 262
Target Start/End: Complemental strand, 22476211 - 22475960
Alignment:
| Q |
15 |
ggtagcttgaatcgtcttccttcagcttgtgttggtgacatggtgat----ggctactatgaagaagggaaaacctgatctcaggaagaaggttttgcca |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
22476211 |
ggtagattgaatcgtcttccttcagcttgtgttggtgacatggtgattgatggctactgtgaagaagggaaaacctgatctcatgaagaaggttttgcca |
22476112 |
T |
|
| Q |
111 |
gctgccatcgttcgccagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctggtgttattgtgaatcctaagggagaaa |
210 |
Q |
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| || ||||||||| ||| | ||||||||||||| ||| ||| ||||||||||||||||| |||||||||| || ||||||||||||||||||||||||| |
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| T |
22476111 |
gttgtcatcgttcgtcagcgtaagccttggcgccaaaatgattgtgtcttcatgtacttcaaagataatgccggcgttattgtgaatcctaagggagaaa |
22476012 |
T |
|
| Q |
211 |
tgaaaggttctgctatcactggaccaattggtaaggggtgtgttgatctttg |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||| || | ||||| ||| ||||| |
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| T |
22476011 |
tgaaaggttctgctatcactggaccaattggcaacgagtgtgctgagctttg |
22475960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 26842281 - 26842378
Alignment:
| Q |
15 |
ggtagcttgaatcgtcttccttcagcttgtgttggtgacatgg----tgatggctactatgaagaagggaaaacctgatctcaggaagaaggttttgc |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
26842281 |
ggtagattgaatcgtcttccttcagcttgtgttggtgacatggtgattgatggctactgtgaagaagggaatacctgatctcaggaagaaggttttgc |
26842378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 26849095 - 26849175
Alignment:
| Q |
132 |
aagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctggtgttattgtgaatcctaagggagaaatg |
212 |
Q |
| |
|
|||||||| |||| ||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
26849095 |
aagccttgacgccaaaaggattgtgtcttcatgtacttcgaagataatgccggcgttattgtgaatcctaagggagaaatg |
26849175 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 15 - 262
Target Start/End: Original strand, 1530503 - 1530754
Alignment:
| Q |
15 |
ggtagcttgaatcgtcttccttcagcttgtgttggtgacatggtgat----ggctactatgaagaagggaaaacctgatctcaggaagaaggttttgcca |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
1530503 |
ggtagattgaatcgtcttccttcagcttgtgttggtgacatggtgattgatggctactgtgaagaaggggaaacctgatctcaggaagaaggttttgcca |
1530602 |
T |
|
| Q |
111 |
gctgccatcgttcgccagtgcaagccttggcgcccaaaggatggtgtcttcatgtacttcgaagataatgctggtgttattgtgaatcctaagggagaaa |
210 |
Q |
| |
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| || ||||||||| ||| | ||||||||||||| ||||||| ||||||||||||||||| ||||||||| || |||||||||||||||||||||||| |
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| T |
1530603 |
gttgtcatcgttcgtcagcgtaagccttggcgccaaaaggatcgtgtcttcatgtacttcaaagataatgacggcattattgtgaatcctaagggagaaa |
1530702 |
T |
|
| Q |
211 |
tgaaaggttctgctatcactggaccaattggtaaggggtgtgttgatctttg |
262 |
Q |
| |
|
|||||| || |||||||||||||||||||||||| | ||||| ||| ||||| |
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|
| T |
1530703 |
tgaaagattatgctatcactggaccaattggtaacgagtgtgctgagctttg |
1530754 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 26797915 - 26797843
Alignment:
| Q |
184 |
gtgttattgtgaatcctaagggagaaatgaaaggttctgctatcactggaccaattggtaaggggtgtgttgat |
257 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||||| |||||||| | ||| |||||||| |||| ||||| |||| |
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| T |
26797915 |
gtgttattgttaatccaaagg-agaaatgaaagggtctgctattagtggtccaattgggaaggagtgtgctgat |
26797843 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 33 - 174
Target Start/End: Complemental strand, 39327952 - 39327811
Alignment:
| Q |
33 |
ccttcagcttgtgttggtgacatggtgatggctactatgaagaagggaaaacctgatctcaggaagaaggttttgccagctgccatcgttcgccagtgca |
132 |
Q |
| |
|
||||||||||| | |||||||||||||||||| || ||||||||||||| ||||||||| | |||||||| | || || | ||||||||| ||| | | |
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| T |
39327952 |
ccttcagcttgcgctggtgacatggtgatggccaccgtgaagaagggaaagcctgatctccgtaagaaggtgcttcctgccgtcatcgttcgtcagcgta |
39327853 |
T |
|
| Q |
133 |
agccttggcgcccaaaggatggtgtcttcatgtacttcgaag |
174 |
Q |
| |
|
| || ||||||| |||||| ||||| |||||||||||||||| |
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|
| T |
39327852 |
aaccatggcgccgaaaggacggtgttttcatgtacttcgaag |
39327811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 39327713 - 39327668
Alignment:
| Q |
173 |
agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt |
218 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||||||||||||||| |
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|
| T |
39327713 |
agataatgctggtgttattgttaatcccaaaggagaaatgaaaggt |
39327668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 39718826 - 39718781
Alignment:
| Q |
173 |
agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt |
218 |
Q |
| |
|
||||||||||||||||||||| ||||| || |||||||| |||||| |
|
|
| T |
39718826 |
agataatgctggtgttattgttaatcccaaaggagaaataaaaggt |
39718781 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 29758696 - 29758741
Alignment:
| Q |
173 |
agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29758696 |
agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt |
29758741 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 25153751 - 25153794
Alignment:
| Q |
173 |
agataatgctggtgttattgtgaatcctaagggagaaatgaaag |
216 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||| |
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|
| T |
25153751 |
agataattctggtgttattgttaatcctaagggagaaatgaaag |
25153794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 5690166 - 5690119
Alignment:
| Q |
215 |
aggttctgctatcactggaccaattggtaaggggtgtgttgatctttg |
262 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| ||||| ||||||||| |
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|
| T |
5690166 |
aggttccgctatcacaggaccaattggtaaggagtgtgctgatctttg |
5690119 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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