View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5688-Insertion-1 (Length: 405)

Name: NF5688-Insertion-1
Description: NF5688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5688-Insertion-1
NF5688-Insertion-1
[»] chr4 (16 HSPs)
chr4 (139-405)||(7530662-7530924)
chr4 (139-405)||(7496947-7497209)
chr4 (173-405)||(7503164-7503391)
chr4 (139-405)||(7522605-7522867)
chr4 (173-405)||(7719604-7719832)
chr4 (28-206)||(7484473-7484647)
chr4 (176-275)||(7126433-7126526)
chr4 (22-109)||(7716024-7716111)
chr4 (28-74)||(7126622-7126668)
chr4 (21-92)||(7522523-7522594)
chr4 (28-96)||(7496872-7496940)
chr4 (28-96)||(7503062-7503130)
chr4 (28-96)||(7719866-7719934)
chr4 (336-405)||(7485988-7486059)
chr4 (28-78)||(7530598-7530648)
chr4 (22-68)||(10477676-10477722)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 139 - 405
Target Start/End: Original strand, 7530662 - 7530924
Alignment:
Q  139 caataaggtaaataaattgttttgaatatattaatactatcatatcaagacttgatttctagctagcttttgacacttgttttgtcatgtctttttctta 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  || | |||||    ||||||||||||||||||||||||||  ||||    
T  7530662 caataaggtaaataaattgttttgaatatattaatactatcatatcaagactgtatgtttagct----tttgacacttgttttgtcatgtcttt--ctta 7530755  T
Q  239 ggctgctaagttgtccttttatcaagaatgatagaaggatcgtaactactctagtcaaagcccctacacaagcataataagtgtaagttttcttaaattt 338  Q
    ||||||| |||||||||||| ||||  |||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7530756 ggctgctgagttgtccttttttcaatgatgatagaaggattataactactcaagtcaaagcccctacacaagcataataagtgtaagttctcttaaattt 7530855  T
Q  339 ctcctatttgttttataattataaagaat--tttatgttgttttttatcatccataataatctactatg 405  Q
    ||| |||||||||||||||||||||  ||  |||||||||||||| ||||||||||||||| |||||||    
T  7530856 ctcatatttgttttataattataaattattatttatgttgtttttcatcatccataataatttactatg 7530924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 139 - 405
Target Start/End: Original strand, 7496947 - 7497209
Alignment:
Q  139 caataaggtaaataaattgttttgaatatattaatactatcatatcaagacttgatttctagctagcttttgacacttgttttgtcatgtctttttctta 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  || | |||||    ||||||||||||||||||||||||||  ||||    
T  7496947 caataaggtaaataaattgttttgaatatattaatactatcatatcaagactgtatgtttagct----tttgacacttgttttgtcatgtcttt--ctta 7497040  T
Q  239 ggctgctaagttgtccttttatcaagaatgatagaaggatcgtaactactctagtcaaagcccctacacaagcataataagtgtaagttttcttaaattt 338  Q
    || |||| |||||||||||| ||||  |||||||||||||  ||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||    
T  7497041 ggatgctgagttgtccttttttcaatgatgatagaaggattataactactcaagtcaaagcccctacacaagaataataagtgtaagttctcttaaattt 7497140  T
Q  339 ctcctatttgttttataattataaagaat--tttatgttgttttttatcatccataataatctactatg 405  Q
    ||| |||||||||||||||||||||| ||  ||||||||||| || ||||||||||||||| |||||||    
T  7497141 ctcatatttgttttataattataaagtattatttatgttgttgttcatcatccataataatatactatg 7497209  T

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Target: chr4; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 173 - 405
Target Start/End: Original strand, 7503164 - 7503391
Alignment:
Q  173 tactatcatatcaagacttgatttctagctagcttttgacacttgttttgtcatgtctttttcttaggctgctaagttgtcctttta-tcaagaatgata 271  Q
    |||||||||||||||||||||||| |||||     |||||||||||||| ||||||||||  ||||||||| | || |||||||| | ||||||||||||    
T  7503164 tactatcatatcaagacttgatttttagctg----ttgacacttgttttttcatgtcttt--cttaggctgttgagatgtcctttgaatcaagaatgata 7503257  T
Q  272 gaaggatcgtaactactctagtcaaagcccctacacaagcataataagtgtaagttttcttaaatttctcctatttgttttataattataaagaatttta 371  Q
    |||||||  ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7503258 gaaggattataactactcaagtcaaagcccctacacaagcataataagtgtaagttctcttaaatttctcctatttgttttataattataaagaatttta 7503357  T
Q  372 tgttgttttttatcatccataataatctactatg 405  Q
    ||||||||||||||||||||||||||||||||||    
T  7503358 tgttgttttttatcatccataataatctactatg 7503391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 139 - 405
Target Start/End: Original strand, 7522605 - 7522867
Alignment:
Q  139 caataaggtaaataaattgttttgaatatattaatactatcatatcaagacttgatttctagctagcttttgacacttgttttgtcatgtctttttctta 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  || | |||||    ||||||||||||||||||||||||||  ||||    
T  7522605 caataaggtaaataaattgttttgaatatattaatactatcatatcaagactgtatgtttagct----tttgacacttgttttgtcatgtcttt--ctta 7522698  T
Q  239 ggctgctaagttgtccttttatcaagaatgatagaaggatcgtaactactctagtcaaagcccctacacaagcataataagtgtaagttttcttaaattt 338  Q
    ||||||| |||||||||||| ||||  |||||||||||||  ||||||||| ||||||||||||||| |||||||||| |||||||||| ||||||||||    
T  7522699 ggctgctgagttgtccttttttcaatgatgatagaaggattataactactcaagtcaaagcccctacgcaagcataatcagtgtaagttctcttaaattt 7522798  T
Q  339 ctcctatttgttttataattataaagaat--tttatgttgttttttatcatccataataatctactatg 405  Q
    ||| |||||||||||||||||||||| ||  ||||||||||| || ||||||||||||||| |||||||    
T  7522799 ctcatatttgttttataattataaagtattatttatgttgttgttcatcatccataataatatactatg 7522867  T

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Target: chr4; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 173 - 405
Target Start/End: Complemental strand, 7719832 - 7719604
Alignment:
Q  173 tactatcatatcaagacttgatttctagctagcttttgacacttgttttgtcatgtctttttcttaggctgctaagttgtccttt-tatcaagaatgata 271  Q
    ||||||||||||||||||||||||     |||||||||||||||||||| |||||||  |||||||||||| | || ||||||||  |||||||||||||    
T  7719832 tactatcatatcaagacttgattt----ttagcttttgacacttgttttttcatgtc--tttcttaggctgttgagatgtcctttgaatcaagaatgata 7719739  T
Q  272 gaaggatcgtaactactctagtcaaagcccctacacaagcataataagtgtaagttttcttaaatttctcctatttgtttta-taattataaagaatttt 370  Q
    |||||||  ||||||||| |||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||| |||||||||||||||||    
T  7719738 gaaggattataactactcaagtcaaagcccctacacaagcataataagtgtcagatctcttaaatttctcctatttgttttattaattataaagaatttt 7719639  T
Q  371 atgttgttttttatcatccataataatctactatg 405  Q
    |||||||| ||||||||||||||||||||||||||    
T  7719638 atgttgttgtttatcatccataataatctactatg 7719604  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 206
Target Start/End: Original strand, 7484473 - 7484647
Alignment:
Q  28 aatcttgcatctatacctgaatgggcaacatcactgcaagtgttagacatctatgattgcccgaaggtgccgtctcggca-----tggagattacgtgga 122  Q
    |||||| |||||||||||||||||| || |||||| ||||| ||||| ||| | | ||||||||| ||| |||||||||      || ||||   |||||    
T  7484473 aatcttacatctatacctgaatgggtaaaatcactacaagtattagatatcaaaggttgcccgaatgtgacgtctcggcggcatgtgtagat---gtgga 7484569  T
Q  123 agatgaataggttctacaataaggtaaataaattgttttgaatatattaatactatcatatcaagacttgatttctagctagct 206  Q
    | || |||| ||||||||| |||||||||||||||||||||||||||      |||||||||| ||| ||||||||||||||||    
T  7484570 acatcaatacgttctacaacaaggtaaataaattgttttgaatatat------tatcatatcatgacatgatttctagctagct 7484647  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 176 - 275
Target Start/End: Complemental strand, 7126526 - 7126433
Alignment:
Q  176 tatcatatcaagacttgatttctagctagcttttgacacttgttttgtcatgtctttttcttaggctgctaagttgtccttttatcaagaatgatagaag 275  Q
    |||||||||||||||||||||||||||    ||||||| ||||||||||| ||| ||  ||||||||||| |||||||||||| || |||||||||||||    
T  7126526 tatcatatcaagacttgatttctagct----tttgacaattgttttgtcaagtcatt--cttaggctgctgagttgtccttttttccagaatgatagaag 7126433  T

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Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 7716111 - 7716024
Alignment:
Q  22 tgtgtcaatcttgcatctatacctgaatgggcaacatcactgcaagtgttagacatctatgattgcccgaaggtgccgtctcggcatg 109  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||| || || ||| | | ||||||||| ||| | ||||||||||    
T  7716111 tgtgtgaatcttacatctatacctgaatgggcaacatcactgcaagtatttgatatcaaaggttgcccgaatgtgacatctcggcatg 7716024  T

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Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 7126668 - 7126622
Alignment:
Q  28 aatcttgcatctatacctgaatgggcaacatcactgcaagtgttaga 74  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  7126668 aatcttacatctatacctgaatgggcaacatcactgcaagtgttaga 7126622  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 7522523 - 7522594
Alignment:
Q  21 ttgtgtcaatcttgcatctatacctgaatgggcaacatcactgcaagtgttagacatctatgattgcccgaa 92  Q
    |||||| |||||| |||||||||||||||||| ||||||||||||||| ||  ||||| | |||||||||||    
T  7522523 ttgtgtgaatcttacatctatacctgaatgggtaacatcactgcaagtattttacatcaaagattgcccgaa 7522594  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 7496872 - 7496940
Alignment:
Q  28 aatcttgcatctatacctgaatgggcaacatcactgcaagtgttagacatctatgattgcccgaaggtg 96  Q
    |||||| |||||||||||||||||| || |||||||||||| ||  ||||| | |||||||||||||||    
T  7496872 aatcttacatctatacctgaatgggtaaaatcactgcaagtatttaacatcgaagattgcccgaaggtg 7496940  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 7503062 - 7503130
Alignment:
Q  28 aatcttgcatctatacctgaatgggcaacatcactgcaagtgttagacatctatgattgcccgaaggtg 96  Q
    |||||| |||||||||||||||||| || |||||||||||| || || ||| | |||||||||||||||    
T  7503062 aatcttacatctatacctgaatgggtaaaatcactgcaagtatttgatatcaaagattgcccgaaggtg 7503130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 7719934 - 7719866
Alignment:
Q  28 aatcttgcatctatacctgaatgggcaacatcactgcaagtgttagacatctatgattgcccgaaggtg 96  Q
    |||||| |||||||||||||||||| || |||||||||||| || || ||| | |||||||||||||||    
T  7719934 aatcttacatctatacctgaatgggtaaaatcactgcaagtatttgatatcaaagattgcccgaaggtg 7719866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 405
Target Start/End: Original strand, 7485988 - 7486059
Alignment:
Q  336 tttctcctatttgttttataattataaagaatt--ttatgttgttttttatcatccataataatctactatg 405  Q
    |||||| ||||||||||| |||||||||| |||  ||||||||||  |  ||||||||||||||||||||||    
T  7485988 tttctcatatttgttttacaattataaagtattatttatgttgttgctcgtcatccataataatctactatg 7486059  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 7530598 - 7530648
Alignment:
Q  28 aatcttgcatctatacctgaatgggcaacatcactgcaagtgttagacatc 78  Q
    |||||| |||||||||||||||||| || |||||||||||| || ||||||    
T  7530598 aatcttacatctatacctgaatgggtaaaatcactgcaagtatttgacatc 7530648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 10477722 - 10477676
Alignment:
Q  22 tgtgtcaatcttgcatctatacctgaatgggcaacatcactgcaagt 68  Q
    ||||||| |||| |||||||||||||||||| |||| ||||||||||    
T  10477722 tgtgtcagtcttacatctatacctgaatgggtaacaacactgcaagt 10477676  T

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