View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5688-Insertion-2 (Length: 1142)

Name: NF5688-Insertion-2
Description: NF5688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5688-Insertion-2
NF5688-Insertion-2
[»] chr2 (8 HSPs)
chr2 (300-944)||(13447268-13447913)
chr2 (7-241)||(13447972-13448206)
chr2 (7-234)||(13454468-13454677)
chr2 (7-131)||(13439919-13440043)
chr2 (131-239)||(13439829-13439937)
chr2 (301-384)||(13454315-13454399)
chr2 (408-471)||(13454185-13454249)
chr2 (880-935)||(13453707-13453763)
[»] chr5 (3 HSPs)
chr5 (7-130)||(28385054-28385177)
chr5 (7-122)||(12540413-12540528)
chr5 (131-228)||(28384975-28385071)
[»] chr8 (1 HSPs)
chr8 (28-131)||(12641838-12641941)
[»] chr4 (3 HSPs)
chr4 (28-130)||(48961011-48961113)
chr4 (28-129)||(48965050-48965151)
chr4 (7-130)||(48967178-48967301)
[»] chr7 (1 HSPs)
chr7 (23-119)||(3417879-3417975)


Alignment Details
Target: chr2 (Bit Score: 551; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 300 - 944
Target Start/End: Complemental strand, 13447913 - 13447268
Alignment:
Q  300 cacaatacctgccacaagtactctcaaatcaatgaagtaacatttagctactctggcagatttaacatgaattttcgaatagtttaaacttaattgtttt 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  13447913 cacaatacctgccacaagtactctcaaatcaatgaagtaacatttagctactctggcagatttaacatgaattttcgaatagttttc-cttaattgtttt 13447815  T
Q  400 gattcaatttttggtgtgtacgtggctattctaacttcttaatgtgtttttgcatttattttaatttttcaactgcgagagtgtttatgtcaacacttct 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447814 gattcaatttttggtgtgtacgtggctattctaacttcttaatgtgtttttgcatttattttaatttttcaactgcgagagtgtttatgtcaacacttct 13447715  T
Q  500 gtcagtctgacattgctgttgtttacagtcgaatgaaatggaagaatcctgtaaagctggtttctgtactttaaatctctagattttgtgggatcctgtc 599  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13447714 gtcagtctgacattgccgttgtttacagtcgaatgaaatggaagaatcctgtaaagctggttcctgtactttaaatctctagattttgtgggatcctgtc 13447615  T
Q  600 nnnnnnnnnnnnnnnngaccgaagattagcccctaatttgtttcattcgctatacataccaagtttggttcgaatgcatttctttcatgtctggttttca 699  Q
                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447614 tgtttctttttcttttgaccgaagattagcccctaatttgtttcattcgctatacataccaagtttggttcgaatgcatttctttcatgtctggttttca 13447515  T
Q  700 atcatctacaatctgtgcaccaacactgttgtatttttt-cgatggatctcttgtcgtgttggtgatccattggtgtcgtcgttgaggcgtctgtcggtg 798  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13447514 atcatctacaatctgtgcaccaacactgttgtatttttttcgatggatctcttgtcgtgttgatgatccattggtgtcgtcgttgaggcgtctgtcggtg 13447415  T
Q  799 gtgggtcaggacgtgtcggtggaatttgcttcgctcattgcagataggactgcaggggtgtggtaatgttgtcatatcgccgactttcatgaatttgaag 898  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13447414 gtgggtcaggacatgtcggtggaatttgcttcgctcattgcagataggactgcaggggtgtggtaatgttgtcatatcgccgactttcatgaatttgaag 13447315  T
Q  899 tgttacaatttg-tttatgctattattagattatatattggatgcat 944  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  13447314 tgttacaatttgttttatgctattattagattatatattggatgcat 13447268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-124
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 13448206 - 13447972
Alignment:
Q  7 agctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaagaagggggctcgtcttataataatttgttggctttgatt 106  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13448206 agctgaaaatatcaggctacgtgctcgagagtttggagaaaaagctatacaagctattcaagaaggtggctcgtcttataataatttgttggctttgatt 13448107  T
Q  107 gacgaacttaaaagatcgagagaccttaaaagattgagagacctcaagctggatgattaattcaaatgagtattgtctaaattttttcaacttttcctaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13448106 gacgaacttaaaagatcgagagaccttaaaagattgagagacctcaagctggatgattaattcaaatgagtattgtctaaattttttcaacttttcctaa 13448007  T
Q  207 taacatcgtggtttcgtcaagcggaagtgtgaatg 241  Q
    |||||||||||||||||||||||||||||||||||    
T  13448006 taacatcgtggtttcgtcaagcggaagtgtgaatg 13447972  T

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Target: chr2; HSP #3
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 13454677 - 13454468
Alignment:
Q  7 agctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaagaagggggctcgtcttataataatttgttggctttgatt 106  Q
    |||| ||||||||||| ||| ||||||||||||||||||||| |||| ||||||||||||| |||| ||||| |||||||||||||||||||||||||||    
T  13454677 agctaaaaatatcagggtacgtgctcgagagtttggagaaaaggctacacaagctattcaaaaaggtggctcatcttataataatttgttggctttgatt 13454578  T
Q  107 gacgaacttaaaagatcgagagaccttaaaagattgagagacctcaagctggatgattaattcaaatgagtattgtctaaattttttcaacttttcctaa 206  Q
    || |||||||||                  ||||||||| ||||||||| | |||||||||||||| ||| ||||| ||| |||||||||||||| ||||    
T  13454577 gatgaacttaaa------------------agattgagaaacctcaagccgcatgattaattcaaaggagcattgtgtaagttttttcaactttttctaa 13454496  T
Q  207 taacatcgtggtttcgtcaagcggaagt 234  Q
    |||||| || |||||||||||| |||||    
T  13454495 taacattgttgtttcgtcaagcagaagt 13454468  T

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Target: chr2; HSP #4
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 13440043 - 13439919
Alignment:
Q  7 agctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaagaagggggctcgtcttataataatttgttggctttgatt 106  Q
    |||| ||||||| ||||||| ||||| ||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  13440043 agctaaaaatatgaggctacttgctcaagagtttggagaaaaggctacacaagctattcaagaaggtggctcgtcttataataatttgttggctttaatt 13439944  T
Q  107 gacgaacttaaaagatcgagagacc 131  Q
    || ||||||||||||| ||||||||    
T  13439943 gaagaacttaaaagattgagagacc 13439919  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 131 - 239
Target Start/End: Complemental strand, 13439937 - 13439829
Alignment:
Q  131 cttaaaagattgagagacctcaagctggatgattaattcaaatgagtattgtctaaattttttcaacttttcctaataacatcgtggtttcgtcaagcgg 230  Q
    ||||||||||||||||||| |||||   |||||||||||||| || |||||||||  |||||||||| | ||||||||| || || | |||||||||| |    
T  13439937 cttaaaagattgagagaccccaagcgacatgattaattcaaaggactattgtctatgttttttcaacctatcctaataatattgttggttcgtcaagcag 13439838  T
Q  231 aagtgtgaa 239  Q
    |||||||||    
T  13439837 aagtgtgaa 13439829  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 301 - 384
Target Start/End: Complemental strand, 13454399 - 13454315
Alignment:
Q  301 acaatacctgccacaagtactctcaaatcaatgaagtaac-atttagctactctggcagatttaacatgaattttcgaatagttt 384  Q
    |||||| |||| |||||||||||||||||||||||| ||| || |||||||  |||||||||||| ||||||||| |||||||||    
T  13454399 acaatatctgcgacaagtactctcaaatcaatgaagcaacaatatagctaccatggcagatttaatatgaatttttgaatagttt 13454315  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 408 - 471
Target Start/End: Complemental strand, 13454249 - 13454185
Alignment:
Q  408 ttttggtgtgtacgtggctattctaacttcttaatgtgtttttgcatttatttt-aatttttcaa 471  Q
    ||||| ||||||||||| | |||||||||||||||||||||| ||||||||||| ||||||||||    
T  13454249 ttttgttgtgtacgtggttcttctaacttcttaatgtgttttcgcatttattttcaatttttcaa 13454185  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 880 - 935
Target Start/End: Complemental strand, 13453763 - 13453707
Alignment:
Q  880 gactttcatgaatttgaagtgttacaatttgtt-tatgctattattagattatatat 935  Q
    |||||||||||||||||||| |||| ||||||| |||| ||||||||||||||||||    
T  13453763 gactttcatgaatttgaagtcttacgatttgttctatgttattattagattatatat 13453707  T

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Target: chr5 (Bit Score: 52; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 28385177 - 28385054
Alignment:
Q  7 agctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaagaagggggctcgtcttataataatttgttggctttgatt 106  Q
    |||||||||||| || | || |||||||||||| ||||| || |||| || |||| || ||||||| || || ||||||||||||||||| ||||| ||     
T  28385177 agctgaaaatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgttaaagaaggtggttcctcttataataatttgttagctttaatc 28385078  T
Q  107 gacgaacttaaaagatcgagagac 130  Q
    |||||||||||||||| |||||||    
T  28385077 gacgaacttaaaagattgagagac 28385054  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 12540528 - 12540413
Alignment:
Q  7 agctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaagaagggggctcgtcttataataatttgttggctttgatt 106  Q
    |||||||||||| || |||| ||| |||||| ||||||| || |||| || |||| |||||||||| || || ||| |||||||||||||  |||||||     
T  12540528 agctgaaaatatgagactacgtgcacgagagattggagagaaggctagacgagctgttcaagaaggtggttcctctcataataatttgttatctttgatc 12540429  T
Q  107 gacgaacttaaaagat 122  Q
    |||||| |||||||||    
T  12540428 gacgaaattaaaagat 12540413  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 228
Target Start/End: Complemental strand, 28385071 - 28384975
Alignment:
Q  131 cttaaaagattgagagacctcaagctggatgattaattcaaatgagtattgtctaaattttttcaacttttcctaataacatcgtggtttcgtcaagc 228  Q
    ||||||||||||||||||  ||| |   ||||||||| ||||||| ||| || | | |||||| ||||| |||||||||| |||| ||||||||||||    
T  28385071 cttaaaagattgagagacagcaaaccacatgattaat-caaatgaatatggtatgagttttttgaacttatcctaataacgtcgttgtttcgtcaagc 28384975  T

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Target: chr8 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 12641838 - 12641941
Alignment:
Q  28 tgctcgagagtttggagaaaaagctatacaagctattcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgaga 127  Q
    ||||| |||||||||  |||| |||| ||| ||| || ||||||| || |||||| |||| |||||||||||||||||| |||| |||||||||||||||    
T  12641838 tgctcaagagtttgggaaaaaggctacacatgctgttgaagaaggcgggtcgtctcataacaatttgttggctttgattaacgatcttaaaagatcgaga 12641937  T
Q  128 gacc 131  Q
    ||||    
T  12641938 gacc 12641941  T

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Target: chr4 (Bit Score: 47; Significance: 3e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 48961113 - 48961011
Alignment:
Q  28 tgctcgagagtttggagaaaaagctatacaagctattcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgaga 127  Q
    ||||||||||||||| || || ||||||  |||| |||||| ||| ||||| ||| ||||||||||||||||||| ||||| || |||||||||| ||||    
T  48961113 tgctcgagagtttggggataaggctatatgagctgttcaagtaggcggctcatctcataataatttgttggctttaattgatgatcttaaaagattgaga 48961014  T
Q  128 gac 130  Q
    |||    
T  48961013 gac 48961011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 48965151 - 48965050
Alignment:
Q  28 tgctcgagagtttggagaaaaagctatacaagctattcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgaga 127  Q
    ||||| ||||||||||||||| |||| || ||| ||||||||||| ||||||||| |||| |||||||| || |||||||| || || ||||||| ||||    
T  48965151 tgctcaagagtttggagaaaaggctagacgagccattcaagaaggtggctcgtctcataagaatttgttagccttgattgatgatctcaaaagattgaga 48965052  T
Q  128 ga 129  Q
    ||    
T  48965051 ga 48965050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 48967301 - 48967178
Alignment:
Q  7 agctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaagaagggggctcgtcttataataatttgttggctttgatt 106  Q
    |||||| || ||||| | || ||||||||| ||||||||||| |||| || |||  |||||||||| |||| |||||||||||||||  | |||||||||    
T  48967301 agctgagaagatcagacaacgtgctcgagactttggagaaaaggctacacgagcacttcaagaaggtggcttgtcttataataatttacttgctttgatt 48967202  T
Q  107 gacgaacttaaaagatcgagagac 130  Q
    || || |||||||||  |||||||    
T  48967201 gatgatcttaaaagaatgagagac 48967178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 3417879 - 3417975
Alignment:
Q  23 ctacatgctcgagagtttggagaaaaagctatacaagctattcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaa 119  Q
    |||| |||||||||| ||||||| || |||| || ||||||||||||||| || || ||  || ||||||||||  ||||||| |||||||||||||    
T  3417879 ctacgtgctcgagagcttggagagaaggctaaacgagctattcaagaaggtggttcctcacatcataatttgttaactttgatcgacgaacttaaaa 3417975  T

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