View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5688-Insertion-3 (Length: 1042)
Name: NF5688-Insertion-3
Description: NF5688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5688-Insertion-3 |
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| [»] scaffold0652 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-175; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-175
Query Start/End: Original strand, 656 - 1024
Target Start/End: Complemental strand, 46241428 - 46241059
Alignment:
| Q |
656 |
cacatattataagttacctgtctcttagcagcttttgggtcttggaaatcacttttgcatttgcgtttgttatgacctattttgtcacatttggtacatc |
755 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46241428 |
cacatattataagttacctgtctcttagcagcttctgggtcttggaaagcacttttgcatttgcgtttgttatgacctattttgtcacatttggtacatc |
46241329 |
T |
|
| Q |
756 |
tataagctgctccaggccttctcatcctacctccatgttcatcaaattccctaatcctaagttttttaggccttcctggacctcttctgtagtgaggtgg |
855 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46241328 |
tataagctactgcaggccttctcatcctacctccatgttcatcaaattccctaatcctaagttttttaggccttcctggacctcttctgtagtgaggtgg |
46241229 |
T |
|
| Q |
856 |
catgattggcctcagattcaacttcaggccacatctcaggaccattaattgcactgatagcatgttcataacac-attcatatgaccttcttgagtaaca |
954 |
Q |
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| T |
46241228 |
catgatttg-ctcagattcaacttcaggccacatctcaggaccattaattgcactgatagcatgttcataacacaattcatatgaccttcttgagtaaca |
46241130 |
T |
|
| Q |
955 |
tggatccacaaagtcctcaggattttgcattttaatatcctaatgcagc-actgcatg-ctacatgggatcc |
1024 |
Q |
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| T |
46241129 |
tggatcaacaaagtcctcaggattttgcattct-atatcctaatgcagcaactgcatgcctacatgggatcc |
46241059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-147
Query Start/End: Original strand, 314 - 604
Target Start/End: Complemental strand, 46241770 - 46241480
Alignment:
| Q |
314 |
aacattgacattctcaacttcaatttgttctgccacttcattttgttgtgctacttcagtttcagtgggctggatttcaggcatagaagcaaaaacctca |
413 |
Q |
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| T |
46241770 |
aacattgacattctcaacttgaattagttctgccacttcattttgttgtggtacttcagtttcagtgggctggatttcaggcatagaagcaaaaacctca |
46241671 |
T |
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| Q |
414 |
tctggtatatcaccaaacaggttttggtcaatttcagaaggttgtccttgttgacctgtgttgacagtttcaatattgccatcagtttgagtgttccctg |
513 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
46241670 |
tctggtatatcaccaaataggttttggtcaatttcagaaggttgtccttgttgacctgtgttgacagtttcaatattgccatcaatatgagtgttccctg |
46241571 |
T |
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| Q |
514 |
cttctccaggctcattgttaactacatgtccatcatgactagtgcttgcaccaccactattgttcttggaaggtttcctctgaaacattca |
604 |
Q |
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| T |
46241570 |
cttctccagactcattgttaactacatgtccatcatgactagtgcttgcaccaccactattcttcttggaaggtttcctctgaaacattca |
46241480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 7e-59
Query Start/End: Original strand, 10 - 235
Target Start/End: Complemental strand, 25923686 - 25923477
Alignment:
| Q |
10 |
tttttcatatcgaaaggtcatgaatgatcaygttttagctactgtgacgaagagactatctgayccgctgatcaaaatatatttcaatctcttttgcatt |
109 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| |
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| T |
25923686 |
tttttcatatcgaaaggtcatga----tcatgttttagctactgtgacgaagagactatctgatccgctgatcaatgt-------------ttttgcatt |
25923604 |
T |
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| Q |
110 |
tttcatacttactaggaaagatttatttccaagctacaatgaaactatctcaata--ctttgttatatttttagttttgctagaactatagtgtkttast |
207 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
25923603 |
tttcatacttactaggaaagatt-attcccaagctacaatgaaactatctcaatatactttgttatatttttagttttgctagaactatagtgttttagt |
25923505 |
T |
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| Q |
208 |
gmttmtmttctsttcaacttttsattgt |
235 |
Q |
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| || | |||| ||||||||| ||||| |
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| T |
25923504 |
gattatattctgttcaactttcgattgt |
25923477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 728 - 857
Target Start/End: Complemental strand, 23542770 - 23542641
Alignment:
| Q |
728 |
tgacctattttgtcacatttggtacatctataagctgctccaggccttctcatcctacctccatgttcatcaaattccctaatcctaagttttttaggcc |
827 |
Q |
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||||||||||||||||||||||| ||||| ||||| |||||||| |||| |||||||| ||| |||||||||| || || ||||| | || |||||||| |
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| T |
23542770 |
tgacctattttgtcacatttggtgcatctgtaagccactccaggcgttcttatcctaccaccaagttcatcaaactctcttatcctcaattatttaggcc |
23542671 |
T |
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| Q |
828 |
ttcctggacctcttctgtagtgaggtggca |
857 |
Q |
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|||| || |||||| |||| | |||||||| |
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| T |
23542670 |
ttccagggcctcttttgtattcaggtggca |
23542641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 316
Target Start/End: Complemental strand, 46239924 - 46239855
Alignment:
| Q |
247 |
catkrttsgtccwcmyrtcatycwtgatgtcctctatksttrccttctyattygtytgcwgcwwctyaac |
316 |
Q |
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| T |
46239924 |
catgattcgtcctcatgtcatccatgatgtcctctatggttaccttcttatttgtttgcagcttcttaac |
46239855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 253; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-144
Query Start/End: Original strand, 314 - 602
Target Start/End: Original strand, 3436764 - 3437052
Alignment:
| Q |
314 |
aacattgacattctcaacttcaatttgttctgccacttcattttgttgtgctacttcagtttcagtgggctggatttcaggcatagaagcaaaaacctca |
413 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3436764 |
aacattgacattctcaacttgaatttgttctgccacttcattttgttgtgctaattcagtttcagtgggctggatttcaggcatagaagcaaaaacctca |
3436863 |
T |
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| Q |
414 |
tctggtatatcaccaaacaggttttggtcaatttcagaaggttgtccttgttgacctgtgttgacagtttcaatattgccatcagtttgagtgttccctg |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3436864 |
tctggtatatcaccaaacaggttttggtcaatttcagaaggttgtccttgttgacctgtgttgacagtttcaatattgtcatcagtttgagtgttccctg |
3436963 |
T |
|
| Q |
514 |
cttctccaggctcattgttaactacatgtccatcatgactagtgcttgcaccaccactattgttcttggaaggtttcctctgaaacatt |
602 |
Q |
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| T |
3436964 |
cctctctagactcactgttaactacatgtccatcatgactagtgcttgcaccaccactattcttcttggaaggtttcccctgaaacatt |
3437052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 777 - 834
Target Start/End: Complemental strand, 6870165 - 6870108
Alignment:
| Q |
777 |
tcatcctacctccatgttcatcaaattccctaatcctaagttttttaggccttcctgg |
834 |
Q |
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|||||||| |||||| ||||||||| || ||||||||||| ||| ||||||||||||| |
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| T |
6870165 |
tcatcctagctccattttcatcaaactctctaatcctaagctttctaggccttcctgg |
6870108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0652 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0652
Description:
Target: scaffold0652; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 771 - 834
Target Start/End: Original strand, 8281 - 8344
Alignment:
| Q |
771 |
gccttctcatcctacctccatgttcatcaaattccctaatcctaagttttttaggccttcctgg |
834 |
Q |
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|||| ||||||||| ||||| ||||||||| || || |||||||| ||||||||||||||||| |
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| T |
8281 |
gcctcctcatcctagatccattttcatcaaactctctgatcctaagctttttaggccttcctgg |
8344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 771 - 834
Target Start/End: Complemental strand, 36916415 - 36916352
Alignment:
| Q |
771 |
gccttctcatcctacctccatgttcatcaaattccctaatcctaagttttttaggccttcctgg |
834 |
Q |
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|||||||||||||| |||||| ||||||||| || || |||| ||| ||| ||||||||||||| |
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| T |
36916415 |
gccttctcatcctagctccattttcatcaaactctctgatcccaagctttctaggccttcctgg |
36916352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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