View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5688-Insertion-4 (Length: 938)
Name: NF5688-Insertion-4
Description: NF5688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5688-Insertion-4 |
 | |
|
| [»] chr3 (6 HSPs) |
| |
|
| [»] chr7 (6 HSPs) |
| |
|
| [»] scaffold0300 (2 HSPs) |
| | |
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| [»] scaffold0140 (2 HSPs) |
| | |
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| [»] scaffold0129 (1 HSPs) |
| | |
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| [»] scaffold0121 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 869; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 869; E-Value: 0
Query Start/End: Original strand, 6 - 938
Target Start/End: Complemental strand, 46240785 - 46239854
Alignment:
| Q |
6 |
caactaagattgtagcattaaatgactcagacaggttattcatcaaaacatcacatttagagtagtagctaaaggcatgcttacaccagcatttagttgg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46240785 |
caactaagattgtagcattaaatgactcagacaggttattcatcagaacatcacatttagagtagtagctaaaggcatgcttacaccagcatttagttgg |
46240686 |
T |
|
| Q |
106 |
ttggcccatcaaccattcccatgcacttgcatcaaccttcttaatctcatccatctttgccttccaaccttgaaaatatgtagctttagcagctcccatc |
205 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46240685 |
ttggcccatcaaccattcccatgcacctgcatcaaccttcttaatctcatccatctttgccttccaaccttgaaaatatgtagctttagcagctcccatc |
46240586 |
T |
|
| Q |
206 |
atcaagtcccttataagagtacctccaccaaatttcttcttgaagttagcatacaaatgtcttaggcagaacctgtgctcaacagtctcaaacatctctt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46240585 |
atcaagtcccttataagagtacctccaccaaatttcttcttgaagttagcatacaaatgtcttaggcagaacctgtgctcaacagtctcaaacatctctt |
46240486 |
T |
|
| Q |
306 |
caaacacactcattagtccctgaaatattcaacaacaataatgttacaatattaatctatgatctatatattaattaaatacatgaaatagactgacatc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
46240485 |
caaacacactcattagtccctgaaatattcaacaccaataatgttacaatattaatctatgatctatatattaattaaatacatgaaatagactgacaac |
46240386 |
T |
|
| Q |
406 |
acttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactca |
505 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46240385 |
atttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactca |
46240286 |
T |
|
| Q |
506 |
gtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagc |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
46240285 |
gtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagcagttgacccccatactttgtctttagatgacaac |
46240186 |
T |
|
| Q |
606 |
catcaaccccaataaatggcctacatccatttgcaaacccttttttgcagccatcaaaacgaaagtaaaaagatccaaacctgggttgtaatcctggatc |
705 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46240185 |
catcaaccccaataaatggcctacatccatttgtaaacccttttttgcaaccatcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatc |
46240086 |
T |
|
| Q |
706 |
tggcctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccc |
805 |
Q |
| |
|
||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46240085 |
tggcctatcaacattgatactcacactatttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccc |
46239986 |
T |
|
| Q |
806 |
tcaacaattttctgagctatctgttttgctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccatgatgtcctctatgg |
905 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46239985 |
tcaacaattttctgagctatctgtttagctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccatgatgtcctctatgg |
46239886 |
T |
|
| Q |
906 |
ttacctttcttatttgtttgcagcttcttaacc |
938 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
46239885 |
ttacc-ttcttatttgtttgcagcttcttaacc |
46239854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 410 - 890
Target Start/End: Complemental strand, 23541775 - 23541295
Alignment:
| Q |
410 |
accttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagttt |
509 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||| | ||||||||||||| | | |||||||||||| ||||||||| |||| |||| |||| |
|
|
| T |
23541775 |
accttctgttgatctgatatgaagacatatctcctatcccttccaatgtcatccattaaaagctccatgaaccatttccagctttccctacactttgttt |
23541676 |
T |
|
| Q |
510 |
caacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatc |
609 |
Q |
| |
|
| || || |||||||| | ||||| || |||||||||||||| ||||||||| | || || ||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
23541675 |
ctactattccaaatgccaatggaaaatattggtcatttgggtccctaccaacaactattagaagttgacccccatactttgtctttaaatgacatccatc |
23541576 |
T |
|
| Q |
610 |
aaccccaataaatggcctacatccatttgcaaacccttttttgcagccatcaaaacgaaagtaaaaagatccaaacctgggttgtaatcctggatctggc |
709 |
Q |
| |
|
||||||| |||||| ||||| ||||| || ||||| || ||||||||||||| |||||| ||||| |||||||||||||| | | ||| ||| |
|
|
| T |
23541575 |
taccccaacaaatggtctacacccattgatgaaacctttcttacagccatcaaaacaaaagtagaaagaaccaaacctgggttggattgatggggttggt |
23541476 |
T |
|
| Q |
710 |
ctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaa |
809 |
Q |
| |
|
||||| ||| | || |||| | ||||||| | ||| ||||||||||| |||||||| |||| ||||| | ||||| | |||||||||||| |||| |
|
|
| T |
23541475 |
ctatccacatttatcttcacattatttccagcattcacccttttaagttctgcagcatacctccaaatcatggcatattgcctatcagcatcaccatcaa |
23541376 |
T |
|
| Q |
810 |
caattttctgagctatctgttttgctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatcca |
890 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||| |||||||| | || |||||||||||||| || |||||||||||||||| |
|
|
| T |
23541375 |
caatactctgagcaatctgttttgccttccaagccctacccattgtaatacccactgcatggtttgtcctcatgtcatcca |
23541295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 6 - 287
Target Start/End: Complemental strand, 23542199 - 23541918
Alignment:
| Q |
6 |
caactaagattgtagcattaaatgactcagacaggttattcatcaaaacatcacatttagagtagtagctaaaggcatgcttacaccagcatttagttgg |
105 |
Q |
| |
|
||||||||||||||||||| || || ||||||| ||||||||||| |||||||| |||||||| || ||||| ||||| ||||||||| ||| ||||| |
|
|
| T |
23542199 |
caactaagattgtagcattgaaagattcagacaagttattcatcaggacatcacacttagagtaataactaaatgcatgtttacaccagatttttgttgg |
23542100 |
T |
|
| Q |
106 |
ttggcccatcaaccattcccatgcacttgcatcaaccttcttaatctcatccatctttgccttccaaccttgaaaatatgtagctttagcagctcccatc |
205 |
Q |
| |
|
|| |||||||||| ||||| |||| |||||||||||||||||||||||||| || ||||| |||||| |||| || || ||||||||||||||| |
|
|
| T |
23542099 |
gtgtaccatcaaccactcccaggcaccattgtcaaccttcttaatctcatccatcttagctttccatccttgataataagtggccttagcagctcccatc |
23542000 |
T |
|
| Q |
206 |
atcaagtcccttataagagtacctccaccaaatttcttcttgaagttagcatacaaatgtcttaggcagaacctgtgctcaa |
287 |
Q |
| |
|
|||| |||||||| ||||| || || |||||||||||||| ||||| ||||| | |||||||||||| | ||||||||||| |
|
|
| T |
23541999 |
atcagatcccttatgagagttccacccccaaatttcttcttaaagtttgcataaagatgtcttaggcataccctgtgctcaa |
23541918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 409 - 582
Target Start/End: Original strand, 30038134 - 30038307
Alignment:
| Q |
409 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
508 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| ||||||| || || || |||| |||||||| | ||||||| ||||| || || ||||||||||| |
|
|
| T |
30038134 |
taccttttgttgatctgatatgaacacatatctcttatcttcacctatatcttccatcagcaactgcgtgaaccatttccaagtttccttgcactcagtt |
30038233 |
T |
|
| Q |
509 |
tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgaccccc |
582 |
Q |
| |
|
||||| | ||||| || || ||||| |||||||||||||||||||| || |||||||| | ||||||||||| |
|
|
| T |
30038234 |
tcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagttgaccccc |
30038307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 309
Target Start/End: Original strand, 30037944 - 30038057
Alignment:
| Q |
196 |
agctcccatcatcaagtcccttataagagtacctccaccaaatttcttcttgaagttagcatacaaatgtcttaggcagaacctgtgctcaacagtctca |
295 |
Q |
| |
|
||||||||||||||| || ||||| || | ||||| ||||| ||||||||||| ||||||||||||||||| ||||| || || || |||| | | ||| |
|
|
| T |
30037944 |
agctcccatcatcaaatctcttatttgactgcctcctccaaacttcttcttgaaattagcatacaaatgtctaaggcacaatctatgatcaatactatca |
30038043 |
T |
|
| Q |
296 |
aacatctcttcaaa |
309 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
30038044 |
aacatctcatcaaa |
30038057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 267
Target Start/End: Complemental strand, 44478592 - 44478497
Alignment:
| Q |
172 |
accttgaaaatatgtagctttagcagctcccatcatcaagtcccttataagagtacctccaccaaatttcttcttgaagttagcatacaaatgtct |
267 |
Q |
| |
|
|||||| |||||||| || || || ||||||||||||||||| || || | || ||||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
44478592 |
accttggaaatatgttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtct |
44478497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 379 - 938
Target Start/End: Original strand, 3437067 - 3437613
Alignment:
| Q |
379 |
attaaatacatgaaatagactgacatcacttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatg |
478 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3437067 |
attaaatacatgaaatagactgacaacacttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatg |
3437166 |
T |
|
| Q |
479 |
aaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgac |
578 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3437167 |
aaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagcagttgac |
3437266 |
T |
|
| Q |
579 |
ccccatactttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgcaaacccttttttgcagccatcaaaacgaaagtaaaaaga |
678 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
3437267 |
caccatactttgtctttagatgacagccatcaaccccaataaatggcctacatccatttgtaaacccttttttgcatccatcaaaacaaaagtaaaaaga |
3437366 |
T |
|
| Q |
679 |
tccaaacctgggttgtaatcctggatctggcctatcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatc |
778 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3437367 |
tccaaacctgggttgtaatcctggatctggcctatcaacattgatactcacactgtttccaggacacactcttttaagttcagcagcatatctccttatc |
3437466 |
T |
|
| Q |
779 |
attgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacctttggtgatacccactgcatgattcgtcc |
878 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3437467 |
attgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccc------------tacccactgcatgattcgtcc |
3437554 |
T |
|
| Q |
879 |
tcatgtcatccatgatgtcctctatggttacctttcttatttgtttgcagcttcttaacc |
938 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3437555 |
tcatgtcatcgatgatgtcctctatggttacc-ttcttatttgtttgcagcttcttaacc |
3437613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 37876100 - 37876048
Alignment:
| Q |
41 |
ttattcatcaaaacatcacatttagagtagtagctaaaggcatgcttacacca |
93 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
37876100 |
ttattcattaaaacatcacatttagagtagtaggtaaatgcatgcttacacca |
37876048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 279
Target Start/End: Original strand, 14798430 - 14798629
Alignment:
| Q |
80 |
gcatgcttacaccagcatttagttggttggcccatcaaccattcccatgcacttgcatcaaccttcttaatctcatccatctttgccttccaaccttgaa |
179 |
Q |
| |
|
||||| |||||||| | ||||||||| || ||||||||||||| ||||| | || || ||||||| ||||| |||||| || ||| ||||| |
|
|
| T |
14798430 |
gcatgtttacaccaacctttagttggatgctgcatcaaccattcctatgcatctctgtctacattcttaagctcattcatcttctgctcccagccttggt |
14798529 |
T |
|
| Q |
180 |
aatatgtagctttagcagctcccatcatcaagtcccttataagagtacctccaccaaatttcttcttgaagttagcatacaaatgtcttaggcagaacct |
279 |
Q |
| |
|
||||||||| || ||||| |||||||||||||| || || | || ||||| ||||| |||||||| || |||||||||||||| |||| ||| ||||| |
|
|
| T |
14798530 |
aatatgtagtcttggcagcacccatcatcaagtctctaatcaatgttcctcctccaaacttcttcttaaaattagcatacaaatgccttaagcacaacct |
14798629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 279
Target Start/End: Original strand, 15245422 - 15245621
Alignment:
| Q |
80 |
gcatgcttacaccagcatttagttggttggcccatcaaccattcccatgcacttgcatcaaccttcttaatctcatccatctttgccttccaaccttgaa |
179 |
Q |
| |
|
||||| |||||||| | ||||||||| || ||||||||||||| ||||| | || || ||||||| ||||| |||||| || ||| ||||| |
|
|
| T |
15245422 |
gcatgtttacaccaacctttagttggatgctgcatcaaccattcctatgcatctctgtctacattcttaagctcattcatcttctgctcccagccttggt |
15245521 |
T |
|
| Q |
180 |
aatatgtagctttagcagctcccatcatcaagtcccttataagagtacctccaccaaatttcttcttgaagttagcatacaaatgtcttaggcagaacct |
279 |
Q |
| |
|
||||||||| || ||||| |||||||||||||| || || | || ||||| ||||| |||||||| || |||||||||||||| |||| ||| ||||| |
|
|
| T |
15245522 |
aatatgtagtcttggcagcacccatcatcaagtctctaatcaatgttcctcctccaaacttcttcttaaaattagcatacaaatgccttaagcacaacct |
15245621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 506 - 631
Target Start/End: Original strand, 14798952 - 14799077
Alignment:
| Q |
506 |
gtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagc |
605 |
Q |
| |
|
|||||||||| ||||| || | ||||||||| || |||||||| ||||| || ||||| | | | |||||| ||||| |||||||| || ||||| | |
|
|
| T |
14798952 |
gtttcaacaacaccaaaagctaaaggaaagtattgatcatttggatctcttcctacagccaccaacaattgacctccatattttgtcttcaggtgacacc |
14799051 |
T |
|
| Q |
606 |
catcaaccccaataaatggcctacat |
631 |
Q |
| |
|
||||||| ||||||||||| |||||| |
|
|
| T |
14799052 |
catcaacaccaataaatggtctacat |
14799077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 506 - 631
Target Start/End: Original strand, 15245944 - 15246069
Alignment:
| Q |
506 |
gtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagc |
605 |
Q |
| |
|
|||||||||| ||||| || | ||||||||| || |||||||| ||||| || ||||| | | | |||||| ||||| |||||||| || ||||| | |
|
|
| T |
15245944 |
gtttcaacaacaccaaaagctaaaggaaagtattgatcatttggatctcttcctacagccaccaacaattgacctccatattttgtcttcaggtgacacc |
15246043 |
T |
|
| Q |
606 |
catcaaccccaataaatggcctacat |
631 |
Q |
| |
|
||||||| ||||||||||| |||||| |
|
|
| T |
15246044 |
catcaacaccaataaatggtctacat |
15246069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300 (Bit Score: 89; Significance: 2e-42; HSPs: 2)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 8 - 312
Target Start/End: Complemental strand, 18698 - 18394
Alignment:
| Q |
8 |
actaagattgtagcattaaatgactcagacaggttattcatcaaaacatcacatttagagtagtagctaaaggcatgcttacaccagcatttagttggtt |
107 |
Q |
| |
|
||||| ||||| |||||||||||||||| ||||| ||||| | ||||||||| |||| ||||| ||| |||||||||||||| | |||||| || | |
|
|
| T |
18698 |
actaatattgttgcattaaatgactcagttaggttgttcattagaacatcacacttagggtagtgagaaaaagcatgcttacaccaacttttagtagggt |
18599 |
T |
|
| Q |
108 |
ggcccatcaaccattcccatgcacttgcatcaaccttcttaatctcatccatctttgccttccaaccttgaaaatatgtagctttagcagctcccatcat |
207 |
Q |
| |
|
| ||||||||||||||| |||| ||||||||||||| | |||||||| |||||||||||| ||||||| || || ||||||||||| |||||||| |
|
|
| T |
18598 |
gtgacatcaaccattcccaggcaccaacatcaaccttcttcaattcatccatttttgccttccaagcttgaaagtaggttgctttagcagcacccatcat |
18499 |
T |
|
| Q |
208 |
caagtcccttataagagtacctccaccaaatttcttcttgaagttagcatacaaatgtcttaggcagaacctgtgctcaacagtctcaaacatctcttca |
307 |
Q |
| |
|
|| ||||||||| | || || |||||||| ||||||||| |||| ||||| |||||||||| || | |||||||||| | |||||||| |||||| |
|
|
| T |
18498 |
caggtcccttatcaaggttccaccaccaaacttcttcttgtagtttgcatataaatgtcttaaacatagtctgtgctcaattgagtcaaacatttcttca |
18399 |
T |
|
| Q |
308 |
aacac |
312 |
Q |
| |
|
||||| |
|
|
| T |
18398 |
aacac |
18394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 409 - 693
Target Start/End: Complemental strand, 18289 - 18005
Alignment:
| Q |
409 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
508 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| || || || ||||||| || || || |||||| ||||| |||||||||||| | | || | |
|
|
| T |
18289 |
taccttctgttgatctgatatgaagacatatcttttgtcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttctact |
18190 |
T |
|
| Q |
509 |
tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccat |
608 |
Q |
| |
|
||||||| ||||| || || ||||| ||||||||||| ||||| || |||||||| | || ||||| || ||||| || || || | ||| || |||| |
|
|
| T |
18189 |
tcaacaacaccaaaggccaggggaaaatactggtcattggggtcccttccaacagctagcagaagttgtccaccatatttggttttcaaatggcacccat |
18090 |
T |
|
| Q |
609 |
caaccccaataaatggcctacatccatttgcaaacccttttttgcagccatcaaaacgaaagtaaaaagatccaaacctgggttg |
693 |
Q |
| |
|
| ||||| | ||| || |||||| || | |||||| | |||||||||||||| |||||| ||||| ||||| |||||||| |
|
|
| T |
18089 |
ctacccccacaaagggtctacatgcagctttgaaccctctcttgcagccatcaaatgaaaagtagaaagacccaaatctgggttg |
18005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 2e-42; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 8 - 312
Target Start/End: Original strand, 24675633 - 24675937
Alignment:
| Q |
8 |
actaagattgtagcattaaatgactcagacaggttattcatcaaaacatcacatttagagtagtagctaaaggcatgcttacaccagcatttagttggtt |
107 |
Q |
| |
|
||||| ||||| |||||||||||||||| ||||| ||||| | ||||||||| |||| ||||| ||| |||||||||||||| | |||||| || | |
|
|
| T |
24675633 |
actaatattgttgcattaaatgactcagttaggttgttcattagaacatcacacttagggtagtgagaaaaagcatgcttacaccaacttttagtagggt |
24675732 |
T |
|
| Q |
108 |
ggcccatcaaccattcccatgcacttgcatcaaccttcttaatctcatccatctttgccttccaaccttgaaaatatgtagctttagcagctcccatcat |
207 |
Q |
| |
|
| ||||||||||||||| |||| ||||||||||||| | |||||||| |||||||||||| ||||||| || || ||||||||||| |||||||| |
|
|
| T |
24675733 |
gtgacatcaaccattcccaggcaccaacatcaaccttcttcaattcatccatttttgccttccaagcttgaaagtaggttgctttagcagcacccatcat |
24675832 |
T |
|
| Q |
208 |
caagtcccttataagagtacctccaccaaatttcttcttgaagttagcatacaaatgtcttaggcagaacctgtgctcaacagtctcaaacatctcttca |
307 |
Q |
| |
|
|| ||||||||| | || || |||||||| ||||||||| |||| ||||| |||||||||| || | |||||||||| | |||||||| |||||| |
|
|
| T |
24675833 |
caggtcccttatcaaggttccaccaccaaacttcttcttgtagtttgcatataaatgtcttaaacatagtctgtgctcaattgagtcaaacatttcttca |
24675932 |
T |
|
| Q |
308 |
aacac |
312 |
Q |
| |
|
||||| |
|
|
| T |
24675933 |
aacac |
24675937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 409 - 693
Target Start/End: Original strand, 24676042 - 24676326
Alignment:
| Q |
409 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
508 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| || || || ||||||| || || || |||||| ||||| |||||||||||| | | || | |
|
|
| T |
24676042 |
taccttctgttgatctgatatgaagacatatcttttgtcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttctact |
24676141 |
T |
|
| Q |
509 |
tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccat |
608 |
Q |
| |
|
||||||| ||||| || || ||||| ||||||||||| ||||| || |||||||| | || ||||| || ||||| || || || | ||| || |||| |
|
|
| T |
24676142 |
tcaacaacaccaaaggccagtggaaaatactggtcattggggtcccttccaacagctagcagaagttgtccaccatatttggttttcaaatggcacccat |
24676241 |
T |
|
| Q |
609 |
caaccccaataaatggcctacatccatttgcaaacccttttttgcagccatcaaaacgaaagtaaaaagatccaaacctgggttg |
693 |
Q |
| |
|
| ||||| | ||| || |||||| || | |||||| | |||||||||||||| |||||| ||||| ||||| |||||||| |
|
|
| T |
24676242 |
ctacccccacaaagggtctacatgcagctttgaaccctctcttgcagccatcaaatgaaaagtagaaagacccaaatctgggttg |
24676326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 19395974 - 19395892
Alignment:
| Q |
182 |
tatgtagctttagcagctcccatcatcaagtcccttataagagtacctccaccaaatttcttcttgaagttagcatacaaatg |
264 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||| || ||||| |||||||| ||||||||||| ||||| || ||||| ||||| |
|
|
| T |
19395974 |
tatgtagccttagcagctcccatcataaggtctctaataagtgtacctcctccaaatttctttttgaaattggcatataaatg |
19395892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 8e-36; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 8 - 269
Target Start/End: Original strand, 4496825 - 4497086
Alignment:
| Q |
8 |
actaagattgtagcattaaatgactcagacaggttattcatcaaaacatcacatttagagtagtagctaaaggcatgcttacaccagcatttagttggtt |
107 |
Q |
| |
|
||||| ||||| |||||||| || |||| ||||| ||||| | ||||||||||||| ||||| ||| |||||||||||||| | |||||| || | |
|
|
| T |
4496825 |
actaatattgttgcattaaaggattcagttaggttgttcattagtacatcacatttaggatagtaagaaaaagcatgcttacaccaacttttagtagggt |
4496924 |
T |
|
| Q |
108 |
ggcccatcaaccattcccatgcacttgcatcaaccttcttaatctcatccatctttgccttccaaccttgaaaatatgtagctttagcagctcccatcat |
207 |
Q |
| |
|
| ||||||||||||||| |||| |||||||||||||| | |||||||| |||||||||||| ||||||| || || ||||| ||||| |||||||| |
|
|
| T |
4496925 |
gcagcatcaaccattcccaggcaccagcatcaaccttcttcaattcatccatttttgccttccaagcttgaaagtaggttgcttttgcagcacccatcat |
4497024 |
T |
|
| Q |
208 |
caagtcccttataagagtacctccaccaaatttcttcttgaagttagcatacaaatgtctta |
269 |
Q |
| |
|
|| ||||||||| | || || |||||||| ||||| |||||||| ||||| |||||||||| |
|
|
| T |
4497025 |
caggtcccttatcaaggttccaccaccaaacttctttttgaagtttgcatataaatgtctta |
4497086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 409 - 585
Target Start/End: Complemental strand, 6869201 - 6869027
Alignment:
| Q |
409 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
508 |
Q |
| |
|
|||||| || |||||||||||||| |||| |||| ||||| || || || |||| |||||||| ||||||||| ||||| ||| || ||||||||||| |
|
|
| T |
6869201 |
taccttttgttgatctgatatgaacacatctctt--atcttgacctatatcttccatcagcaactgcatgaaccatttccaactttccttgcactcagtt |
6869104 |
T |
|
| Q |
509 |
tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccata |
585 |
Q |
| |
|
||||| | ||||| || || |||||||||||||||||||||||||| || |||||||| | ||||| |||||||| |
|
|
| T |
6869103 |
tcaactaccccaaaagctagtggaaagtactggtcatttgggtctctccctacagcaatcaacagttggcccccata |
6869027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 409 - 564
Target Start/End: Original strand, 4497222 - 4497377
Alignment:
| Q |
409 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
508 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||| || || ||||||| || || || |||||| ||||| |||||||||||| | | ||| | |
|
|
| T |
4497222 |
taccttctgttgatctgatatgaagacatatcttttatcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttcaact |
4497321 |
T |
|
| Q |
509 |
tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagc |
564 |
Q |
| |
|
||||||| ||||| || || ||||| ||||||||||| ||||| || |||||||| |
|
|
| T |
4497322 |
tcaacaacaccaaaggccagtggaaaatactggtcattggggtcccttccaacagc |
4497377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 309
Target Start/End: Complemental strand, 6869452 - 6869337
Alignment:
| Q |
194 |
gcagctcccatcatcaagtcccttataagagtacctccaccaaatttcttcttgaagttagcatacaaatgtcttaggcagaacctgtgctcaacagtct |
293 |
Q |
| |
|
||||||||||||||||| || ||||| || | ||||| ||||| ||||||||||| || |||||||||||||| ||||| || || || |||| | | | |
|
|
| T |
6869452 |
gcagctcccatcatcaaatctcttatttgactgcctcctccaaacttcttcttgaaatttgcatacaaatgtctcaggcacaatctatgatcaatactat |
6869353 |
T |
|
| Q |
294 |
caaacatctcttcaaa |
309 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
6869352 |
caaacatctcatcaaa |
6869337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 518 - 631
Target Start/End: Original strand, 11318291 - 11318404
Alignment:
| Q |
518 |
ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa |
617 |
Q |
| |
|
|||||||| | |||||| || || |||||||||||||| |||| ||||| || ||||| || ||||| | |||||||||||||| |||||||| || | |
|
|
| T |
11318291 |
ccaaatgctaaaggaaaatattgatcatttgggtctcttgcaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga |
11318390 |
T |
|
| Q |
618 |
taaatggcctacat |
631 |
Q |
| |
|
|||| || |||||| |
|
|
| T |
11318391 |
taaaaggtctacat |
11318404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 6869632 - 6869553
Alignment:
| Q |
14 |
attgtagcattaaatgactcagacaggttattcatcaaaacatcacatttagagtagtagctaaaggcatgcttacacca |
93 |
Q |
| |
|
||||| |||||||| || ||||| | ||| ||||||| ||||||||||||||||| || |||| |||||||||||||| |
|
|
| T |
6869632 |
attgtggcattaaaggattcagatatgttgttcatcagtacatcacatttagagtaaaaggtaaaagcatgcttacacca |
6869553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 17323735 - 17323686
Alignment:
| Q |
44 |
ttcatcaaaacatcacatttagagtagtagctaaaggcatgcttacacca |
93 |
Q |
| |
|
||||||||||||||||| |||||||| || |||| |||||||||||||| |
|
|
| T |
17323735 |
ttcatcaaaacatcacacttagagtaataattaaaagcatgcttacacca |
17323686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 1e-25; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 409 - 585
Target Start/End: Complemental strand, 29878409 - 29878233
Alignment:
| Q |
409 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
508 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| ||||||| || || || |||| |||||||| |||||||| ||||| ||| || ||||||||||| |
|
|
| T |
29878409 |
taccttttgttgatctgatatgaacacatatctcttatcttgacctatatcttccatcagcaactgtatgaaccatttccaactttccttgcactcagtt |
29878310 |
T |
|
| Q |
509 |
tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccata |
585 |
Q |
| |
|
||||| | ||||| || || ||||| |||||||||||||||||||| || |||||||| | ||||| |||||||| |
|
|
| T |
29878309 |
tcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagttgccccccata |
29878233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 185 - 285
Target Start/End: Complemental strand, 23315239 - 23315139
Alignment:
| Q |
185 |
gtagctttagcagctcccatcatcaagtcccttataagagtacctccaccaaatttcttcttgaagttagcatacaaatgtcttaggcagaacctgtgct |
284 |
Q |
| |
|
||||| || ||||| |||||||| |||||||| || || |||||||||||||| |||||||||||||| ||||||| ||| |||||||| || ||||||| |
|
|
| T |
23315239 |
gtagccttggcagcacccatcattaagtccctaattagtgtacctccaccaaacttcttcttgaagtttgcatacagatgccttaggcaaaatctgtgct |
23315140 |
T |
|
| Q |
285 |
c |
285 |
Q |
| |
|
| |
|
|
| T |
23315139 |
c |
23315139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 194 - 309
Target Start/End: Complemental strand, 29878628 - 29878513
Alignment:
| Q |
194 |
gcagctcccatcatcaagtcccttataagagtacctccaccaaatttcttcttgaagttagcatacaaatgtcttaggcagaacctgtgctcaacagtct |
293 |
Q |
| |
|
||||||||||||||||| || ||||| || | ||||| ||||| ||||||||||| ||||||||||||||||| ||||| || || || |||| ||| | |
|
|
| T |
29878628 |
gcagctcccatcatcaaatctcttatttgactgcctcctccaaacttcttcttgaaattagcatacaaatgtctaaggcacaatctatgatcaatagtat |
29878529 |
T |
|
| Q |
294 |
caaacatctcttcaaa |
309 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
29878528 |
caaacatctcatcaaa |
29878513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 267
Target Start/End: Original strand, 21975586 - 21975681
Alignment:
| Q |
172 |
accttgaaaatatgtagctttagcagctcccatcatcaagtcccttataagagtacctccaccaaatttcttcttgaagttagcatacaaatgtct |
267 |
Q |
| |
|
|||||| |||||||| || || || ||||||||||||||||| || || | || ||||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
21975586 |
accttggaaatatgttgcctttgctgctcccatcatcaagtctctaatcaaggtccctcctccaaacttcttcttgaagttagcatataaatgtct |
21975681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 2e-24; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 409 - 567
Target Start/End: Original strand, 3921199 - 3921357
Alignment:
| Q |
409 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
508 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| ||||||| || || || |||| |||||||| |||||||| ||||| ||| || ||||||||||| |
|
|
| T |
3921199 |
taccttttgttgatctgatatgaacacatatctcttatcttgacctatatcttccatcagcaactgtatgaaccatttccaactttccttgcactcagtt |
3921298 |
T |
|
| Q |
509 |
tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaat |
567 |
Q |
| |
|
||||| | ||||| || || ||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
3921299 |
tcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaat |
3921357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 194 - 309
Target Start/End: Original strand, 3920980 - 3921095
Alignment:
| Q |
194 |
gcagctcccatcatcaagtcccttataagagtacctccaccaaatttcttcttgaagttagcatacaaatgtcttaggcagaacctgtgctcaacagtct |
293 |
Q |
| |
|
||||||||||||||||| || ||||| || | ||||| ||||| ||||||||||| ||||||||||||||||| ||||| || || || |||| ||| | |
|
|
| T |
3920980 |
gcagctcccatcatcaaatctcttatttgactgcctcctccaaacttcttcttgaaattagcatacaaatgtctaaggcacaatctatgatcaatagtat |
3921079 |
T |
|
| Q |
294 |
caaacatctcttcaaa |
309 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
3921080 |
caaacatctcatcaaa |
3921095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 260
Target Start/End: Original strand, 17129789 - 17129867
Alignment:
| Q |
182 |
tatgtagctttagcagctcccatcatcaagtcccttataagagtacctccaccaaatttcttcttgaagttagcataca |
260 |
Q |
| |
|
||||| |||||||| || ||||||||| ||||||| || || |||||||||| |||| ||||||||||| ||||||| |
|
|
| T |
17129789 |
tatgttgctttagctgcccccatcatcgagtccctgattgcagcacctccaccatattttttcttgaagtttgcataca |
17129867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 1379396 - 1379445
Alignment:
| Q |
44 |
ttcatcaaaacatcacatttagagtagtagctaaaggcatgcttacacca |
93 |
Q |
| |
|
||||||||||||||||| |||||||| || |||| |||||||||||||| |
|
|
| T |
1379396 |
ttcatcaaaacatcacacttagagtaataattaaaagcatgcttacacca |
1379445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 1381710 - 1381759
Alignment:
| Q |
44 |
ttcatcaaaacatcacatttagagtagtagctaaaggcatgcttacacca |
93 |
Q |
| |
|
||||||||||||||||| |||||||| || |||| |||||||||||||| |
|
|
| T |
1381710 |
ttcatcaaaacatcacacttagagtaataattaaaagcatgcttacacca |
1381759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 194 - 313
Target Start/End: Original strand, 37578 - 37697
Alignment:
| Q |
194 |
gcagctcccatcatcaagtcccttataagagtacctccaccaaatttcttcttgaagttagcatacaaatgtcttaggcagaacctgtgctcaacagtct |
293 |
Q |
| |
|
|||||||||||||| | |||||| || || |||||||| ||||||||||| ||||| || ||||| | ||| || | ||| ||||| ||||| ||| ||| |
|
|
| T |
37578 |
gcagctcccatcatgaggtccctaatgagtgtacctcctccaaatttctttttgaaattggcatatagatgcctcaagcataacctatgctccacactct |
37677 |
T |
|
| Q |
294 |
caaacatctcttcaaacaca |
313 |
Q |
| |
|
|||||||||| ||||||||| |
|
|
| T |
37678 |
caaacatctcctcaaacaca |
37697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 530 - 630
Target Start/End: Original strand, 40053 - 40153
Alignment:
| Q |
530 |
ggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaataaatggcctac |
629 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||| | || ||| |||||||| ||||| |||||||| |||||||| || ||||| ||||||| |
|
|
| T |
40053 |
ggaaaatactggtcatttgggtctctaccaacaacaattaaaagagtacctccatacttggtcttaagatgacacccatcaactcctataaagggcctac |
40152 |
T |
|
| Q |
630 |
a |
630 |
Q |
| |
|
| |
|
|
| T |
40153 |
a |
40153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 327
Target Start/End: Complemental strand, 886 - 741
Alignment:
| Q |
182 |
tatgtagctttagcagctcccatcatcaagtcccttataagagtacctccaccaaatttcttcttgaagttagcatacaaatgtcttaggcagaacctgt |
281 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||| || ||||| |||||||| ||||||||||| ||||| || ||||| ||||| || | || | || | |
|
|
| T |
886 |
tatgtagccttagcagctcccatcataaggtctctaataagtgtacctcctccaaatttctttttgaaattggcatataaatgcctcaaacacagtctat |
787 |
T |
|
| Q |
282 |
gctcaacagtctcaaacatctcttcaaacacactcattagtccctg |
327 |
Q |
| |
|
|||| ||| ||||||||| ||| ||||| ||| ||||||| ||||| |
|
|
| T |
786 |
gctccacactctcaaacaactcatcaaaaacagtcattagaccctg |
741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 409 - 512
Target Start/End: Complemental strand, 36915439 - 36915336
Alignment:
| Q |
409 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
508 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| ||||||| || || || |||| ||||||| ||||||||| ||||| ||| || ||||||||||| |
|
|
| T |
36915439 |
taccttttgttgatctgatatgaacacatatctcttatcttgacctatatcttccattagcaactgcatgaaccatttccaactttccttgcactcagtt |
36915340 |
T |
|
| Q |
509 |
tcaa |
512 |
Q |
| |
|
|||| |
|
|
| T |
36915339 |
tcaa |
36915336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 31812435 - 31812353
Alignment:
| Q |
182 |
tatgtagctttagcagctcccatcatcaagtcccttataagagtacctccaccaaatttcttcttgaagttagcatacaaatg |
264 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||| || ||||| |||||||| ||||||||||| ||||| || ||||| ||||| |
|
|
| T |
31812435 |
tatgtagccttagcagctcccatcataaggtctctaataagtgtacctcctccaaatttctttttgaaattggcatataaatg |
31812353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 26268880 - 26268781
Alignment:
| Q |
180 |
aatatgtagctttagcagctcccatcatcaagtcccttataagagtacctccaccaaatttcttcttgaagttagcatacaaatgtcttaggcagaacct |
279 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||| || || | || ||||| ||||| |||||||| || |||||||||||||| |||| ||| ||||| |
|
|
| T |
26268880 |
aatatgtagccttggcagcacccatcatcaagtctctaatcaatgttcctcctccaaacttcttcttaaaattagcatacaaatgccttaagcacaacct |
26268781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 36915871 - 36915798
Alignment:
| Q |
20 |
gcattaaatgactcagacaggttattcatcaaaacatcacatttagagtagtagctaaaggcatgcttacacca |
93 |
Q |
| |
|
||||||||||| ||| | | ||| |||||||| |||||||| |||||||| || |||| |||||||||||||| |
|
|
| T |
36915871 |
gcattaaatgattcaaatatgttgttcatcaatacatcacacttagagtaaaaggtaaaagcatgcttacacca |
36915798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 22056768 - 22056686
Alignment:
| Q |
182 |
tatgtagctttagcagctcccatcatcaagtcccttataagagtacctccaccaaatttcttcttgaagttagcatacaaatg |
264 |
Q |
| |
|
|||||||| ||||||||||||||||| | ||| || ||||| |||||||| ||||||||||| ||||| || ||||| ||||| |
|
|
| T |
22056768 |
tatgtagccttagcagctcccatcataaggtctctaataagtgtacctcctccaaatttctttttgaaattggcatataaatg |
22056686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 518 - 631
Target Start/End: Original strand, 18131561 - 18131674
Alignment:
| Q |
518 |
ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa |
617 |
Q |
| |
|
|||||||| | |||||| || || ||||||||| |||| ||||| ||||| || ||||| || ||||| | |||||||||||||| |||||||| || | |
|
|
| T |
18131561 |
ccaaatgctaaaggaaaatattgatcatttgggcctcttccaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga |
18131660 |
T |
|
| Q |
618 |
taaatggcctacat |
631 |
Q |
| |
|
|||| || |||||| |
|
|
| T |
18131661 |
taaaaggtctacat |
18131674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 518 - 631
Target Start/End: Complemental strand, 43607 - 43494
Alignment:
| Q |
518 |
ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa |
617 |
Q |
| |
|
|||||||| | |||||| || || ||||||||| |||| ||||| ||||| || ||||| || ||||| | |||||||||||||| |||||||| || | |
|
|
| T |
43607 |
ccaaatgctaaaggaaaatattgatcatttgggcctcttccaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga |
43508 |
T |
|
| Q |
618 |
taaatggcctacat |
631 |
Q |
| |
|
|||| || |||||| |
|
|
| T |
43507 |
taaaaggtctacat |
43494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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