View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5688-Insertion-5 (Length: 500)
Name: NF5688-Insertion-5
Description: NF5688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5688-Insertion-5 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 72 - 500
Target Start/End: Original strand, 26846476 - 26846904
Alignment:
| Q |
72 |
atttgcaatgaaccttgtattcaaggataccatttttctcatggtttataatttggtgaggatgtataactgtggttgaatgatgttctttataagggat |
171 |
Q |
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| T |
26846476 |
atttgcaatgaaccttgtattcaaggatacaatttttctcatggtttataatttggtgaggatgtataaccgtagttgaatgatgtccttcataaggggt |
26846575 |
T |
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| Q |
172 |
agtatttgggtgacataaaatttgatgatatttgtcaattacaatgttataagtgatatttttctttctcttttacaaagattgtaattgatgaatgtca |
271 |
Q |
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| T |
26846576 |
agtatttgggtgacataagatttgatgatagttgtcaattacaatattataagtgacatttttctttctcttttacaaagattgtgattgatcaatgtca |
26846675 |
T |
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| Q |
272 |
caaatatcacaaaatactatgccacccaaatgttaccggagagtagttaaaagaaagaaattagttggcgcatttgagtatagtgaatgtggcagaccaa |
371 |
Q |
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| T |
26846676 |
caaatatcacaaaatattatgccacccaaatgttactcgagagcggttaacataaaaaaattagttggcgcatttgagtatagggagagtggcagaccaa |
26846775 |
T |
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| Q |
372 |
catgattatgtttggtaagaatgaatgatttctaccatcaatggctcaaactttgagggggaagaaaggtcatcttgactcatttttgaaaacgttgggt |
471 |
Q |
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| T |
26846776 |
catgattatgtttggtaagaatgaatgatttctaccatcaatggctcaaactttgagggggaagaaaagtcatcttgactcatttttgaaaacgttgggt |
26846875 |
T |
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| Q |
472 |
ttgaggaattaattcgtacaaattctgag |
500 |
Q |
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| T |
26846876 |
ttgaggaattaattcgtacaaattctgag |
26846904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 26846449 - 26846512
Alignment:
| Q |
8 |
ctcctaacaataaatatatccactacaatttgcaatgaaccttgtattcaaggataccattttt |
71 |
Q |
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| T |
26846449 |
ctcctaacaataaatatatccggtacaatttgcaatgaaccttgtattcaaggatacaattttt |
26846512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 55516858 - 55516895
Alignment:
| Q |
166 |
agggatagtatttgggtgacataaaatttgatgatatt |
203 |
Q |
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| T |
55516858 |
agggatagtatttggatgacataaaatttgatgatatt |
55516895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 38219212 - 38219156
Alignment:
| Q |
193 |
ttgatgatatttgtcaattacaatgttataagtgatatttttctttctcttttacaa |
249 |
Q |
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| T |
38219212 |
ttgatgatattgatcaactacaatgttacaagtgactttcttctttctcttttacaa |
38219156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 31848321 - 31848269
Alignment:
| Q |
167 |
gggatagtatttgggtgacataaaat-ttgatgatatttgtcaattacaatgt |
218 |
Q |
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| T |
31848321 |
gggatagtatttgggtgacatatatggttgatgatatttgtcaatcacaatgt |
31848269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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