View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5688_high_2 (Length: 458)
Name: NF5688_high_2
Description: NF5688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5688_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 138 - 413
Target Start/End: Original strand, 7652075 - 7652350
Alignment:
| Q |
138 |
aatagagaatcctttgaataaaatgaaactatctatggggagtaatggtcctgctcacatgatgatgaatgctcaaaagatcagtgcaggaaatggtgga |
237 |
Q |
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| T |
7652075 |
aatagagaatactttgaataaaatgaaactatctatggggagtaatggtcctgctcacatgatgatgaatgctcaaaagatcagtgcaggaaatggtgga |
7652174 |
T |
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| Q |
238 |
ggcattgaaataaaaggtggtggcggaagtggtggagtacctatgcctgttcaagttcattccttggctggtggaaatgggaatggaggaaagaaaggtg |
337 |
Q |
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| T |
7652175 |
ggcattgaaataaaaggtggtggcggaagtgttggaggacctatgcctgttcaagttcattccttggctggtggaaatgggaatggaggaaagaaaggtg |
7652274 |
T |
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| Q |
338 |
gtggtggcgacggtggaaataatcagagtcagaatcaaggtggaatgccagagggtaaaaatggaaataagaatgt |
413 |
Q |
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| T |
7652275 |
gtggtggcgaaggtggaaataatcagattcagaatcaaggtggaatgccagaaggtaaaaatggaaataagaatgt |
7652350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 7657490 - 7657560
Alignment:
| Q |
146 |
atcctttgaataaaatgaaactatctatggggagtaatggtcctgctcacatgatgatgaatgctcaaaag |
216 |
Q |
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| T |
7657490 |
atcctttgaataagatgaaactacctatggggggtaatggtcctgctcacatgatgatgaatgctcaaaag |
7657560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 7651951 - 7652006
Alignment:
| Q |
17 |
caccaccaaatcaaaatccaaatatgaaaggtgttaagttcaatttgcctaaagag |
72 |
Q |
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| T |
7651951 |
caccaccaaatcaaaatccaaatatgaaaggtgttaaggtcaatttgcctaaagag |
7652006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 7657352 - 7657407
Alignment:
| Q |
17 |
caccaccaaatcaaaatccaaatatgaaaggtgttaagttcaatttgcctaaagag |
72 |
Q |
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| T |
7657352 |
caccaccaaatcaaaatacaaatatgaaaggtgttaagttcaatttgcctgaagag |
7657407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 7657639 - 7657695
Alignment:
| Q |
325 |
ggaaagaaaggtggtggtggcgacggtggaaataatcagagtcagaatcaaggtgga |
381 |
Q |
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| T |
7657639 |
ggaaagaaaggtggtggtggtggtggcggaaataatcagagtcagaatcaaggtgga |
7657695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 375 - 413
Target Start/End: Original strand, 7657725 - 7657763
Alignment:
| Q |
375 |
aggtggaatgccagagggtaaaaatggaaataagaatgt |
413 |
Q |
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| T |
7657725 |
aggtggaatgccagagggtaaaaatggaaataagaatgt |
7657763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 344
Target Start/End: Complemental strand, 48572934 - 48572896
Alignment:
| Q |
306 |
tggtggaaatgggaatggaggaaagaaaggtggtggtgg |
344 |
Q |
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| T |
48572934 |
tggtggaaatggcaatggaggaaagaaaggtggtggtgg |
48572896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 48538612 - 48538558
Alignment:
| Q |
310 |
ggaaatgggaatggaggaaagaaaggtggtggtggcgacggtggaaataatcaga |
364 |
Q |
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| T |
48538612 |
ggaaatggcaatggaggaaagaaaggtggcggtggtggtggaggaaataatcaga |
48538558 |
T |
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